Wall clock time and date at job start Sun Mar 29 2020 21:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 120.00397 * 2 1 4 4 H 1.48500 * 109.47270 * 270.00274 * 3 2 1 5 5 H 1.48497 * 109.47182 * 30.00334 * 3 2 1 6 6 H 1.48501 * 109.47213 * 149.99973 * 3 2 1 7 7 C 1.40050 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.46380 * 120.00269 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99384 * 0.02562 * 9 7 2 11 11 N 1.34771 * 119.99995 * 179.97438 * 9 7 2 12 12 C 1.47429 * 125.65071 * 4.64837 * 11 9 7 13 13 C 1.54913 * 104.82885 * 204.16058 * 12 11 9 14 14 C 1.55155 * 101.58297 * 322.98449 * 13 12 11 15 15 C 1.47019 * 125.64521 * 184.67907 * 11 9 7 16 16 H 1.09000 * 109.88237 * 59.34355 * 15 11 9 17 17 C 1.52994 * 109.88664 * 298.32905 * 15 11 9 18 18 C 1.53003 * 117.50175 * 176.03695 * 17 15 11 19 19 C 1.53004 * 60.03008 * 252.52073 * 18 17 15 20 20 H 0.97003 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.36458 * 322.99380 * 12 11 9 22 22 H 1.08998 * 110.37016 * 85.31957 * 12 11 9 23 23 H 1.08997 * 111.00411 * 81.06030 * 13 12 11 24 24 H 1.09005 * 110.99764 * 204.87806 * 13 12 11 25 25 H 1.08999 * 110.72158 * 277.14490 * 14 13 12 26 26 H 1.09001 * 110.72056 * 153.86295 * 14 13 12 27 27 H 1.09002 * 115.56430 * 321.72356 * 17 15 11 28 28 H 1.09003 * 117.50007 * 145.02291 * 18 17 15 29 29 H 1.08997 * 117.49940 * 0.02562 * 18 17 15 30 30 H 1.08995 * 117.50000 * 107.47984 * 19 18 17 31 31 H 1.09002 * 117.49426 * 252.47763 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6477 -0.0016 12 6 3.4126 -3.7949 0.0943 13 6 3.7165 -5.1678 -0.5559 14 6 2.4999 -6.0098 -0.0888 15 6 1.3459 -4.9851 -0.0992 16 1 0.7802 -5.0699 -1.0270 17 6 0.4232 -5.2285 1.0967 18 6 -0.3700 -6.5366 1.1223 19 6 -1.0857 -5.2142 0.8394 20 1 -0.4849 0.8401 0.0004 21 1 3.9110 -2.9964 -0.4552 22 1 3.7267 -3.7916 1.1380 23 1 3.7424 -5.0882 -1.6427 24 1 4.6493 -5.5829 -0.1741 25 1 2.6624 -6.3974 0.9169 26 1 2.3011 -6.8215 -0.7887 27 1 0.7751 -4.8346 2.0502 28 1 -0.5399 -7.0032 2.0926 29 1 -0.2341 -7.2240 0.2874 30 1 -1.4204 -5.0315 -0.1817 31 1 -1.7267 -4.8111 1.6235 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306256626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:43 Heat of formation + Delta-G solvation = -14.479017 kcal Electronic energy + Delta-G solvation = -14093.316882 eV Core-core repulsion = 11761.280394 eV Total energy + Delta-G solvation = -2332.036488 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.84807 -36.10733 -35.17202 -32.44009 -30.26441 -28.30579 -26.05396 -22.89085 -21.86030 -20.86937 -20.26212 -18.61301 -16.61832 -15.68189 -15.23169 -14.75364 -14.12523 -13.66354 -12.98794 -12.82123 -12.54786 -12.01587 -11.77179 -11.26266 -11.11339 -11.07410 -10.86111 -10.71289 -10.63422 -10.24744 -10.19831 -10.10474 -9.69118 -9.25474 -8.81164 -7.50719 -7.11097 -6.15033 -4.59289 3.15328 3.22106 3.25387 4.09891 4.33880 4.60537 4.75916 5.13922 5.19859 5.31592 5.51643 5.60927 5.72777 5.86579 5.91998 6.01348 6.04173 6.11205 6.24110 6.32123 6.49539 6.57467 6.62852 6.70531 6.78288 6.95633 7.47440 7.49099 8.17563 8.48548 9.06333 9.58796 10.63599 10.83927 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037957 B = 0.010542 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.505510 B = 2655.491942 C = 3281.614816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.571 3.429 10 O -0.564 6.564 11 N -0.639 5.639 12 C 0.117 3.883 13 C -0.136 4.136 14 C -0.123 4.123 15 C 0.175 3.825 16 H 0.054 0.946 17 C -0.138 4.138 18 C -0.196 4.196 19 C -0.150 4.150 20 H 0.267 0.733 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -8.866 0.523 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.377 3.623 10 O -0.446 6.446 11 N -0.379 5.379 12 C -0.007 4.007 13 C -0.175 4.175 14 C -0.161 4.161 15 C 0.070 3.930 16 H 0.072 0.928 17 C -0.157 4.157 18 C -0.233 4.233 19 C -0.187 4.187 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.372 -8.646 0.520 9.702 hybrid contribution 0.517 0.842 0.079 0.991 sum 4.889 -7.804 0.599 9.228 Atomic orbital electron populations 1.70024 1.06974 1.27129 1.35626 1.25705 0.94611 1.00175 0.92710 0.86404 0.80186 0.81569 0.78793 1.19782 1.20495 1.18945 1.20911 0.93531 0.89132 1.54173 0.91427 1.18007 0.86820 0.81137 0.76366 1.90612 1.13594 1.85784 1.54578 1.48820 1.04893 1.04361 1.79845 1.21890 0.84319 0.95816 0.98712 1.22807 0.97535 0.96416 1.00697 1.22598 0.95009 0.97212 1.01292 1.20730 0.92627 0.84570 0.95091 0.92752 1.22524 0.93945 0.99010 1.00222 1.22957 1.07142 0.91317 1.01910 1.22704 0.95273 0.98177 1.02529 0.92208 0.91272 0.93726 0.91341 0.91188 0.91123 0.91460 0.88697 0.89765 0.89556 0.89062 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.47 9.00 -35.63 -0.32 -15.79 16 8 H 0.07 1.79 6.55 -52.48 -0.34 1.45 16 9 C 0.57 16.51 7.60 -12.99 -0.10 16.41 16 10 O -0.56 -18.12 14.23 5.20 0.07 -18.05 16 11 N -0.64 -14.97 3.06 -164.65 -0.50 -15.47 16 12 C 0.12 2.21 6.61 -2.52 -0.02 2.19 16 13 C -0.14 -2.00 7.08 -24.58 -0.17 -2.18 16 14 C -0.12 -1.85 6.31 -24.89 -0.16 -2.01 16 15 C 0.17 3.48 3.05 -66.95 -0.20 3.27 16 16 H 0.05 1.16 7.97 -51.93 -0.41 0.75 16 17 C -0.14 -2.68 4.48 -90.58 -0.41 -3.08 16 18 C -0.20 -3.05 10.06 -26.73 -0.27 -3.32 16 19 C -0.15 -2.90 9.60 -26.69 -0.26 -3.15 16 20 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 21 H 0.07 1.33 6.97 -51.93 -0.36 0.97 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 260.15 15.07 3.92 3.92 Total: -1.00 -33.13 260.15 -7.34 -40.47 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.46 Total: 1.60 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.00 Total: -5.29 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.15 Total: -38.01 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.07 Total: -18.05 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.13 -7.34 -40.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306256626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.988 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds