Wall clock time and date at job start Sun Mar 29 2020 21:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 120.00397 * 2 1 4 4 H 1.48500 * 109.47270 * 270.00274 * 3 2 1 5 5 H 1.48497 * 109.47182 * 30.00334 * 3 2 1 6 6 H 1.48501 * 109.47213 * 149.99973 * 3 2 1 7 7 C 1.40050 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.46380 * 120.00269 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99384 * 0.02562 * 9 7 2 11 11 N 1.34771 * 119.99995 * 179.97438 * 9 7 2 12 12 C 1.47429 * 125.65071 * 4.64837 * 11 9 7 13 13 C 1.54913 * 104.82885 * 204.16058 * 12 11 9 14 14 C 1.55155 * 101.58297 * 322.98449 * 13 12 11 15 15 C 1.47019 * 125.64521 * 184.67907 * 11 9 7 16 16 H 1.09000 * 109.88237 * 59.34355 * 15 11 9 17 17 C 1.52994 * 109.88664 * 298.32905 * 15 11 9 18 18 C 1.53003 * 117.50175 * 176.03695 * 17 15 11 19 19 C 1.53004 * 60.03008 * 252.52073 * 18 17 15 20 20 H 0.97003 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.36458 * 322.99380 * 12 11 9 22 22 H 1.08998 * 110.37016 * 85.31957 * 12 11 9 23 23 H 1.08997 * 111.00411 * 81.06030 * 13 12 11 24 24 H 1.09005 * 110.99764 * 204.87806 * 13 12 11 25 25 H 1.08999 * 110.72158 * 277.14490 * 14 13 12 26 26 H 1.09001 * 110.72056 * 153.86295 * 14 13 12 27 27 H 1.09002 * 115.56430 * 321.72356 * 17 15 11 28 28 H 1.09003 * 117.50007 * 145.02291 * 18 17 15 29 29 H 1.08997 * 117.49940 * 0.02562 * 18 17 15 30 30 H 1.08995 * 117.50000 * 107.47984 * 19 18 17 31 31 H 1.09002 * 117.49426 * 252.47763 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6477 -0.0016 12 6 3.4126 -3.7949 0.0943 13 6 3.7165 -5.1678 -0.5559 14 6 2.4999 -6.0098 -0.0888 15 6 1.3459 -4.9851 -0.0992 16 1 0.7802 -5.0699 -1.0270 17 6 0.4232 -5.2285 1.0967 18 6 -0.3700 -6.5366 1.1223 19 6 -1.0857 -5.2142 0.8394 20 1 -0.4849 0.8401 0.0004 21 1 3.9110 -2.9964 -0.4552 22 1 3.7267 -3.7916 1.1380 23 1 3.7424 -5.0882 -1.6427 24 1 4.6493 -5.5829 -0.1741 25 1 2.6624 -6.3974 0.9169 26 1 2.3011 -6.8215 -0.7887 27 1 0.7751 -4.8346 2.0502 28 1 -0.5399 -7.0032 2.0926 29 1 -0.2341 -7.2240 0.2874 30 1 -1.4204 -5.0315 -0.1817 31 1 -1.7267 -4.8111 1.6235 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306256626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:42 Heat of formation + Delta-G solvation = -36.435279 kcal Electronic energy + Delta-G solvation = -14094.268977 eV Core-core repulsion = 11761.280394 eV Total energy + Delta-G solvation = -2332.988583 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.49459 -37.98778 -36.81521 -34.61213 -31.96338 -29.82325 -28.12365 -24.54035 -23.27360 -22.44663 -21.80627 -20.35304 -18.51206 -17.68959 -16.86962 -16.36291 -15.85923 -15.28192 -14.67130 -14.53123 -14.12219 -13.60774 -13.43525 -13.05276 -12.94357 -12.65643 -12.47015 -12.37624 -12.13349 -12.01053 -11.81974 -11.47587 -11.20265 -10.92759 -10.70985 -9.71704 -9.00522 -8.27323 -6.82444 1.37085 1.39090 1.53740 2.22690 2.48416 2.78002 3.14292 3.58862 3.81672 3.85808 3.96298 4.20790 4.23608 4.30625 4.44602 4.62587 4.76076 4.82052 4.99476 4.99931 5.06812 5.17186 5.22717 5.26595 5.32805 5.35042 5.47245 5.73521 6.09303 6.50289 6.88401 7.56690 8.52061 8.71101 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037957 B = 0.010542 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.505510 B = 2655.491942 C = 3281.614816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.551 3.449 10 O -0.613 6.613 11 N -0.649 5.649 12 C 0.106 3.894 13 C -0.121 4.121 14 C -0.109 4.109 15 C 0.165 3.835 16 H 0.030 0.970 17 C -0.159 4.159 18 C -0.138 4.138 19 C -0.182 4.182 20 H 0.273 0.727 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -10.252 0.674 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.606 4.606 8 H 0.101 0.899 9 C 0.357 3.643 10 O -0.499 6.499 11 N -0.387 5.387 12 C -0.017 4.017 13 C -0.159 4.159 14 C -0.147 4.147 15 C 0.061 3.939 16 H 0.048 0.952 17 C -0.179 4.179 18 C -0.175 4.175 19 C -0.219 4.219 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.834 -10.088 0.671 12.204 hybrid contribution -0.254 1.216 0.035 1.243 sum 6.580 -8.872 0.706 11.069 Atomic orbital electron populations 1.70200 1.09408 1.28697 1.36900 1.26950 0.95528 1.04781 0.91344 0.85070 0.78815 0.75307 0.79425 1.18588 1.19762 1.17294 1.21414 0.94440 0.90017 1.54708 0.89947 1.18353 0.86609 0.83142 0.76232 1.90559 1.15548 1.87173 1.56617 1.48656 1.07178 1.04549 1.78292 1.22173 0.81415 0.98522 0.99629 1.22781 0.99132 0.93291 1.00678 1.22596 0.92480 0.96331 1.03257 1.20996 0.94518 0.84300 0.94085 0.95190 1.22461 0.93571 1.02694 0.99128 1.23046 1.01082 0.89293 1.04092 1.22642 0.95602 1.02694 1.00970 0.91758 0.92201 0.93024 0.91045 0.87115 0.89400 0.88447 0.90728 0.86998 0.86969 0.91338 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.66 11.83 21.84 0.26 -51.40 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 0.99 42.20 29.56 68.60 2.03 44.23 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.57 -33.46 9.00 24.83 0.22 -33.23 16 8 H 0.08 4.41 6.55 -2.91 -0.02 4.39 16 9 C 0.55 33.30 7.60 86.36 0.66 33.95 16 10 O -0.61 -41.80 14.23 -4.33 -0.06 -41.86 16 11 N -0.65 -30.97 3.06 -793.07 -2.43 -33.40 16 12 C 0.11 3.88 6.61 86.86 0.57 4.45 16 13 C -0.12 -3.12 7.08 31.99 0.23 -2.89 16 14 C -0.11 -2.89 6.31 31.79 0.20 -2.69 16 15 C 0.17 6.54 3.05 45.34 0.14 6.68 16 16 H 0.03 1.31 7.97 -2.39 -0.02 1.29 16 17 C -0.16 -6.22 4.48 -10.77 -0.05 -6.27 16 18 C -0.14 -3.97 10.06 30.60 0.31 -3.67 16 19 C -0.18 -7.30 9.60 30.62 0.29 -7.00 16 20 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 21 H 0.06 2.27 6.97 -2.39 -0.02 2.25 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.11 2.04 8.14 -2.38 -0.02 2.03 16 25 H 0.09 2.08 7.85 -2.39 -0.02 2.06 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 3.01 8.09 -2.39 -0.02 2.99 16 31 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -77.45 260.15 3.94 -73.51 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.10 Total: 17.48 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 3.04 Total: -8.56 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.17 Total: -84.79 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.06 Total: -41.86 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -77.45 3.94 -73.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306256626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.075 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds