Wall clock time and date at job start Sun Mar 29 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46921 * 2 1 4 4 C 1.34283 * 125.75119 * 125.00367 * 3 2 1 5 5 C 1.38114 * 107.40261 * 180.02562 * 4 3 2 6 6 C 1.47358 * 126.41944 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99551 * 179.97438 * 6 5 4 9 9 C 1.36979 * 119.99575 * 179.72307 * 8 6 5 10 10 H 1.08001 * 120.00400 * 0.27701 * 9 8 6 11 11 C 1.38981 * 120.00075 * 180.27687 * 9 8 6 12 12 N 1.31414 * 119.99682 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00213 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47403 * 120.00341 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00138 * 13 11 9 17 17 C 1.41321 * 107.15750 * 0.25649 * 5 4 3 18 18 N 1.30451 * 108.02471 * 359.55970 * 17 5 4 19 19 H 1.09001 * 109.46786 * 299.99619 * 1 2 3 20 20 H 1.08998 * 109.47306 * 60.00347 * 1 2 3 21 21 H 1.09001 * 109.46529 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47140 * 240.00026 * 2 1 3 23 23 H 1.08997 * 109.47751 * 119.99946 * 2 1 3 24 24 H 1.07994 * 126.30179 * 0.03875 * 4 3 2 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 0.96999 * 119.99863 * 180.02562 * 12 11 9 27 27 H 1.08001 * 125.98744 * 179.74044 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8692 1.9126 0.8927 5 6 3.0705 3.2319 0.5369 6 6 3.9309 4.2044 1.2336 7 8 4.5485 3.8685 2.2261 8 7 4.0333 5.4661 0.7710 9 6 4.8286 6.3717 1.4220 10 1 5.3771 6.0734 2.3033 11 6 4.9298 7.6744 0.9484 12 7 4.2621 8.0375 -0.1237 13 14 6.0149 8.9091 1.8356 14 1 6.6548 8.2552 3.0052 15 1 7.0652 9.4014 0.9084 16 1 5.1878 10.0524 2.2983 17 6 2.2916 3.4761 -0.6168 18 7 1.6762 2.3693 -0.9300 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 3.3144 1.4023 1.7339 25 1 3.5405 5.7342 -0.0203 26 1 4.3330 8.9466 -0.4544 27 1 2.2208 4.4138 -1.1479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306287822.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:32 Heat of formation + Delta-G solvation = 32.331286 kcal Electronic energy + Delta-G solvation = -13062.481589 eV Core-core repulsion = 10628.934604 eV Total energy + Delta-G solvation = -2433.546984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.80023 -37.67607 -34.29946 -33.88519 -31.19582 -30.10737 -29.12669 -25.16905 -23.64867 -21.87819 -20.22709 -18.98742 -17.92193 -16.96130 -15.38843 -15.23891 -14.55788 -14.17051 -13.96061 -13.69068 -13.18967 -12.72811 -12.27673 -12.24891 -12.13655 -11.51631 -11.46344 -11.08279 -10.49062 -10.30927 -10.17821 -9.51408 -9.16622 -8.40468 -8.11757 -7.90273 -6.39813 -3.76212 2.09491 2.68379 2.80967 3.24584 3.29534 3.37121 4.21185 4.50690 4.50919 4.86528 5.03659 5.13721 5.21113 5.39463 5.43170 5.54762 5.65126 5.90036 6.03809 6.06011 6.61322 6.95364 7.25222 7.58075 7.97736 8.12835 8.66875 9.21327 9.60803 10.14187 10.78244 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.078596 B = 0.006612 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.168815 B = 4233.462288 C = 4516.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.095 3.905 5 C -0.251 4.251 6 C 0.512 3.488 7 O -0.606 6.606 8 N -0.553 5.553 9 C -0.295 4.295 10 H 0.105 0.895 11 C 0.021 3.979 12 N -0.898 5.898 13 Si 0.931 3.069 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.071 3.929 18 N -0.308 5.308 19 H 0.060 0.940 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.181 0.819 25 H 0.393 0.607 26 H 0.272 0.728 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -11.601 -1.606 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.155 5.155 4 C -0.054 4.054 5 C -0.266 4.266 6 C 0.299 3.701 7 O -0.493 6.493 8 N -0.187 5.187 9 C -0.425 4.425 10 H 0.123 0.877 11 C -0.181 4.181 12 N -0.539 5.539 13 Si 0.758 3.242 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.116 4.116 18 N -0.128 5.128 19 H 0.080 0.920 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.113 0.887 24 H 0.198 0.802 25 H 0.227 0.773 26 H 0.082 0.918 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.424 -12.322 -1.863 14.020 hybrid contribution 0.769 1.233 0.443 1.519 sum -5.655 -11.089 -1.421 12.528 Atomic orbital electron populations 1.22051 0.93959 1.02521 1.03717 1.21644 0.95965 0.77807 1.03606 1.48438 1.35605 1.10129 1.21296 1.22820 0.93378 0.94150 0.95071 1.20716 1.08827 0.95391 1.01662 1.16876 0.84971 0.82266 0.85959 1.90578 1.50948 1.79221 1.28548 1.41699 1.41614 1.08260 1.27110 1.19798 1.22263 0.89973 1.10432 0.87697 1.25293 0.98164 0.98081 0.96544 1.69621 1.41797 1.19839 1.22658 0.85779 0.79338 0.79834 0.79277 1.19170 1.20752 1.20743 1.24144 0.94582 0.97130 0.95748 1.76983 1.24725 0.97259 1.13863 0.92040 0.91057 0.90965 0.89955 0.88732 0.80244 0.77344 0.91843 0.79534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.09 37.16 0.37 -1.12 15 2 C 0.13 1.31 7.21 -4.04 -0.03 1.28 15 3 N -0.37 -5.67 3.65 -60.78 -0.22 -5.90 15 4 C 0.10 1.64 11.25 -16.52 -0.19 1.45 15 5 C -0.25 -5.19 6.13 -105.06 -0.64 -5.84 15 6 C 0.51 13.01 7.76 -12.55 -0.10 12.91 15 7 O -0.61 -17.22 16.47 5.26 0.09 -17.13 15 8 N -0.55 -14.59 5.27 -11.97 -0.06 -14.65 15 9 C -0.29 -8.38 9.68 -14.98 -0.14 -8.52 15 10 H 0.11 3.11 7.15 -52.49 -0.38 2.73 15 11 C 0.02 0.57 5.50 -17.45 -0.10 0.47 15 12 N -0.90 -24.60 13.05 55.50 0.72 -23.87 15 13 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 15 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 17 C 0.07 1.32 11.50 -16.97 -0.20 1.12 15 18 N -0.31 -5.35 12.33 30.87 0.38 -4.97 15 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.09 0.71 8.06 -51.93 -0.42 0.29 15 24 H 0.18 2.69 8.06 -52.49 -0.42 2.27 15 25 H 0.39 9.84 6.85 -40.82 -0.28 9.56 15 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 27 H 0.19 3.14 7.50 -52.49 -0.39 2.74 15 LS Contribution 249.27 15.07 3.76 3.76 Total: -1.00 -33.10 249.27 -4.09 -37.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.72 Total: 7.67 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.02 Total: 1.77 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.82 Total: -49.39 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.09 Total: -17.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.10 -4.09 -37.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306287822.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.529 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds