Wall clock time and date at job start Sun Mar 29 2020 21:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46921 * 2 1 4 4 C 1.34283 * 125.75119 * 125.00367 * 3 2 1 5 5 C 1.38114 * 107.40261 * 180.02562 * 4 3 2 6 6 C 1.47358 * 126.41944 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99551 * 179.97438 * 6 5 4 9 9 C 1.36979 * 119.99575 * 179.72307 * 8 6 5 10 10 H 1.08001 * 120.00400 * 0.27701 * 9 8 6 11 11 C 1.38981 * 120.00075 * 180.27687 * 9 8 6 12 12 N 1.31414 * 119.99682 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00213 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47403 * 120.00341 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00138 * 13 11 9 17 17 C 1.41321 * 107.15750 * 0.25649 * 5 4 3 18 18 N 1.30451 * 108.02471 * 359.55970 * 17 5 4 19 19 H 1.09001 * 109.46786 * 299.99619 * 1 2 3 20 20 H 1.08998 * 109.47306 * 60.00347 * 1 2 3 21 21 H 1.09001 * 109.46529 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47140 * 240.00026 * 2 1 3 23 23 H 1.08997 * 109.47751 * 119.99946 * 2 1 3 24 24 H 1.07994 * 126.30179 * 0.03875 * 4 3 2 25 25 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 26 26 H 0.96999 * 119.99863 * 180.02562 * 12 11 9 27 27 H 1.08001 * 125.98744 * 179.74044 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8692 1.9126 0.8927 5 6 3.0705 3.2319 0.5369 6 6 3.9309 4.2044 1.2336 7 8 4.5485 3.8685 2.2261 8 7 4.0333 5.4661 0.7710 9 6 4.8286 6.3717 1.4220 10 1 5.3771 6.0734 2.3033 11 6 4.9298 7.6744 0.9484 12 7 4.2621 8.0375 -0.1237 13 14 6.0149 8.9091 1.8356 14 1 6.6548 8.2552 3.0052 15 1 7.0652 9.4014 0.9084 16 1 5.1878 10.0524 2.2983 17 6 2.2916 3.4761 -0.6168 18 7 1.6762 2.3693 -0.9300 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 3.3144 1.4023 1.7339 25 1 3.5405 5.7342 -0.0203 26 1 4.3330 8.9466 -0.4544 27 1 2.2208 4.4138 -1.1479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306287822.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:31 Heat of formation + Delta-G solvation = 8.423518 kcal Electronic energy + Delta-G solvation = -13063.518307 eV Core-core repulsion = 10628.934604 eV Total energy + Delta-G solvation = -2434.583703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.19870 -39.64860 -35.96310 -35.35279 -33.23876 -31.41989 -30.49116 -27.09199 -24.73332 -23.53395 -21.49296 -20.71942 -19.91712 -18.47910 -16.98066 -16.49098 -16.40895 -15.80877 -15.50646 -15.10875 -14.78849 -14.40195 -13.72146 -13.49929 -13.29808 -12.94384 -12.90934 -12.39482 -12.37624 -12.08854 -11.79550 -11.52663 -10.46793 -10.42711 -10.03215 -9.56120 -8.45992 -5.91947 0.67948 1.22650 1.43822 1.48753 1.52479 1.59727 2.32948 2.59705 3.25901 3.36293 3.68923 3.91963 4.09312 4.14198 4.39570 4.42372 4.53982 4.82452 4.92529 4.95318 5.24986 5.42276 5.49896 6.01626 6.03521 6.56156 6.64411 7.12350 7.57773 8.12785 8.72289 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.078596 B = 0.006612 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.168815 B = 4233.462288 C = 4516.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 N -0.357 5.357 4 C 0.118 3.882 5 C -0.295 4.295 6 C 0.513 3.487 7 O -0.644 6.644 8 N -0.562 5.562 9 C -0.333 4.333 10 H 0.083 0.917 11 C -0.014 4.014 12 N -0.918 5.918 13 Si 0.997 3.003 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.270 1.270 17 C 0.070 3.930 18 N -0.313 5.313 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.129 0.871 24 H 0.205 0.795 25 H 0.396 0.604 26 H 0.279 0.721 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -12.815 -1.738 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.138 5.138 4 C -0.034 4.034 5 C -0.310 4.310 6 C 0.302 3.698 7 O -0.534 6.534 8 N -0.197 5.197 9 C -0.463 4.463 10 H 0.101 0.899 11 C -0.214 4.214 12 N -0.559 5.559 13 Si 0.820 3.180 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.116 4.116 18 N -0.134 5.134 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.125 0.875 22 H 0.119 0.881 23 H 0.147 0.853 24 H 0.222 0.778 25 H 0.231 0.769 26 H 0.088 0.912 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.941 -13.564 -2.041 15.373 hybrid contribution 0.827 1.416 0.457 1.702 sum -6.114 -12.148 -1.584 13.692 Atomic orbital electron populations 1.22030 0.93099 1.04343 1.02272 1.22258 0.96707 0.75048 1.06271 1.48928 1.33886 1.11395 1.19554 1.23133 0.92196 0.93014 0.95089 1.20417 1.10855 0.96157 1.03579 1.17529 0.84437 0.82469 0.85361 1.90526 1.52631 1.79935 1.30294 1.41717 1.41944 1.08660 1.27377 1.19780 1.24087 0.91458 1.10976 0.89949 1.26120 0.99033 0.99126 0.97101 1.69685 1.42288 1.20627 1.23294 0.84810 0.77752 0.77332 0.78062 1.19565 1.19529 1.19511 1.24205 0.94275 0.97942 0.95207 1.76963 1.24593 0.97322 1.14519 0.93093 0.92844 0.87533 0.88085 0.85336 0.77849 0.76946 0.91159 0.78932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.09 71.98 0.73 -1.67 15 2 C 0.12 1.88 7.21 86.38 0.62 2.50 15 3 N -0.36 -9.97 3.65 -346.22 -1.26 -11.23 15 4 C 0.12 3.85 11.25 84.29 0.95 4.80 15 5 C -0.30 -12.19 6.13 -20.15 -0.12 -12.31 15 6 C 0.51 26.77 7.76 86.64 0.67 27.44 15 7 O -0.64 -37.64 16.47 -4.10 -0.07 -37.71 15 8 N -0.56 -30.71 5.27 -310.02 -1.64 -32.35 15 9 C -0.33 -19.55 9.68 84.07 0.81 -18.73 15 10 H 0.08 5.10 7.15 -2.91 -0.02 5.08 15 11 C -0.01 -0.76 5.50 84.93 0.47 -0.29 15 12 N -0.92 -50.48 13.05 21.67 0.28 -50.20 15 13 Si 1.00 43.44 29.55 68.60 2.03 45.47 15 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 17 C 0.07 2.59 11.50 85.66 0.99 3.58 15 18 N -0.31 -10.44 12.33 -56.25 -0.69 -11.13 15 19 H 0.05 0.88 8.14 -2.39 -0.02 0.86 15 20 H 0.05 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.11 0.90 8.14 -2.39 -0.02 0.88 15 22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.13 1.29 8.06 -2.39 -0.02 1.27 15 24 H 0.20 5.57 8.06 -2.91 -0.02 5.55 15 25 H 0.40 20.54 6.85 -92.71 -0.63 19.91 15 26 H 0.28 14.22 8.31 -92.71 -0.77 13.45 15 27 H 0.19 6.58 7.50 -2.91 -0.02 6.56 15 Total: -1.00 -72.44 249.27 4.32 -68.13 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.55 Total: 23.71 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.11 Total: 5.31 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.31 Total: -104.90 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.07 Total: -37.71 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.44 4.32 -68.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306287822.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.553 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds