Wall clock time and date at job start Sun Mar 29 2020 21:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46955 * 119.99889 * 2 1 4 4 O 1.21654 * 120.00003 * 180.02562 * 3 2 1 5 5 N 1.34775 * 119.99865 * 0.02562 * 3 2 1 6 6 C 1.36816 * 120.00019 * 180.02562 * 5 3 2 7 7 H 1.07999 * 119.99799 * 0.02562 * 6 5 3 8 8 C 1.39071 * 120.00408 * 179.97438 * 6 5 3 9 9 N 1.31357 * 119.99857 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00490 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46669 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47330 * 119.99792 * 10 8 6 13 13 H 1.48497 * 109.47057 * 240.00215 * 10 8 6 14 14 C 1.33119 * 120.00283 * 180.02562 * 2 1 3 15 15 C 1.51446 * 126.33708 * 359.97438 * 14 2 1 16 16 C 1.54282 * 106.84905 * 180.33708 * 15 14 2 17 17 C 1.54987 * 103.74985 * 23.12444 * 16 15 14 18 18 C 1.51843 * 126.34512 * 179.97438 * 14 2 1 19 19 H 1.08996 * 109.47163 * 269.99673 * 1 2 3 20 20 H 1.09005 * 109.47072 * 30.00245 * 1 2 3 21 21 H 1.09003 * 109.46954 * 149.99519 * 1 2 3 22 22 H 0.97002 * 120.00454 * 359.97438 * 5 3 2 23 23 H 0.96997 * 119.99705 * 179.97438 * 9 8 6 24 24 H 1.08996 * 109.99044 * 299.68401 * 15 14 2 25 25 H 1.09005 * 109.98620 * 60.99350 * 15 14 2 26 26 H 1.08996 * 110.57285 * 141.69135 * 16 15 14 27 27 H 1.09005 * 110.57234 * 264.55907 * 16 15 14 28 28 H 1.08999 * 110.83018 * 204.70408 * 17 16 15 29 29 H 1.09001 * 110.83046 * 81.12560 * 17 16 15 30 30 H 1.09004 * 110.43923 * 274.96951 * 18 14 2 31 31 H 1.09001 * 110.44013 * 37.36016 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4583 1.2727 -0.0005 5 7 1.5678 2.4398 0.0005 6 6 2.2518 3.6247 0.0000 7 1 3.3318 3.6248 -0.0013 8 6 1.5565 4.8291 0.0000 9 7 0.2429 4.8291 0.0000 10 14 2.4904 6.4470 -0.0015 11 1 3.9504 6.1756 -0.0018 12 1 2.1308 7.2251 -1.2140 13 1 2.1326 7.2261 1.2110 14 6 2.1726 -1.1528 -0.0005 15 6 1.5649 -2.5400 -0.0006 16 6 2.7379 -3.5421 0.0074 17 6 3.9143 -2.7275 0.6028 18 6 3.6818 -1.3206 -0.0011 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 0.5978 2.4399 0.0005 23 1 -0.2420 5.6692 0.0004 24 1 0.9511 -2.6779 0.8895 25 1 0.9600 -2.6817 -0.8963 26 1 2.5058 -4.3984 0.6407 27 1 2.9713 -3.8667 -1.0067 28 1 4.8716 -3.1354 0.2784 29 1 3.8533 -2.6970 1.6907 30 1 4.0695 -1.2744 -1.0189 31 1 4.1500 -0.5559 0.6186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306290857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:32 Heat of formation + Delta-G solvation = -46.464601 kcal Electronic energy + Delta-G solvation = -13623.002762 eV Core-core repulsion = 11289.579275 eV Total energy + Delta-G solvation = -2333.423487 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.80129 -37.10423 -33.94756 -32.86328 -31.07964 -28.48828 -27.16954 -25.22445 -23.30794 -20.49712 -19.88308 -18.11711 -16.96658 -15.68024 -15.23248 -14.87123 -14.28877 -13.68348 -13.52749 -13.08808 -12.48060 -12.36667 -11.97207 -11.88231 -11.62622 -11.44075 -11.11407 -10.87193 -10.69710 -10.45113 -10.36276 -10.26913 -10.19403 -9.53226 -8.20877 -8.10147 -7.92637 -6.45040 -3.79526 2.19739 3.19672 3.26211 3.33885 4.16995 4.39113 4.71895 5.02274 5.18909 5.23216 5.37511 5.52572 5.68376 5.74666 5.86067 5.94272 6.04469 6.05542 6.11473 6.15943 6.30765 6.36457 6.48229 6.63321 6.80241 7.12941 7.36817 7.53256 8.09781 8.64036 9.17915 9.57284 10.12139 10.72792 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061089 B = 0.007354 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.236465 B = 3806.333145 C = 4215.285576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.150 4.150 3 C 0.472 3.528 4 O -0.596 6.596 5 N -0.552 5.552 6 C -0.295 4.295 7 H 0.105 0.895 8 C 0.021 3.979 9 N -0.897 5.897 10 Si 0.931 3.069 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.281 1.281 14 C -0.087 4.087 15 C -0.091 4.091 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.088 4.088 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.394 0.606 23 H 0.272 0.728 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -11.454 0.254 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.154 4.154 3 C 0.261 3.739 4 O -0.484 6.484 5 N -0.187 5.187 6 C -0.425 4.425 7 H 0.123 0.877 8 C -0.181 4.181 9 N -0.538 5.538 10 Si 0.758 3.242 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.090 4.090 15 C -0.128 4.128 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.125 4.125 19 H 0.084 0.916 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.228 0.772 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.329 -11.249 0.251 11.256 hybrid contribution -0.350 0.894 -0.030 0.960 sum -0.021 -10.355 0.221 10.358 Atomic orbital electron populations 1.20727 0.92048 1.02286 1.01875 1.21032 0.95228 0.93350 1.05756 1.17770 0.87459 0.83571 0.85066 1.90548 1.13460 1.87090 1.57290 1.41883 1.09446 1.04697 1.62686 1.19820 0.93606 0.82380 1.46729 0.87686 1.25332 0.95642 0.99887 0.97259 1.69600 1.06065 1.28249 1.49849 0.85770 0.79747 0.80931 0.77751 1.19135 1.20679 1.20682 1.22314 0.96125 0.92670 0.97872 1.21160 0.97726 0.92257 1.01627 1.22357 0.95602 0.97374 1.00737 1.22587 0.97625 0.96226 1.00101 1.21495 0.93058 0.96189 1.01754 0.91610 0.91413 0.92154 0.77157 0.91768 0.91104 0.91137 0.91939 0.91740 0.91846 0.91747 0.91036 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.35 36.00 0.34 -1.53 16 2 C -0.15 -3.03 6.00 -102.88 -0.62 -3.65 16 3 C 0.47 11.95 7.69 -12.73 -0.10 11.86 16 4 O -0.60 -16.63 13.33 5.23 0.07 -16.56 16 5 N -0.55 -14.65 5.22 -12.10 -0.06 -14.71 16 6 C -0.30 -8.42 9.68 -15.02 -0.15 -8.56 16 7 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 8 C 0.02 0.57 5.50 -17.45 -0.10 0.47 16 9 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 10 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C -0.09 -1.56 6.13 -100.20 -0.61 -2.17 16 15 C -0.09 -1.23 5.53 -26.85 -0.15 -1.38 16 16 C -0.12 -1.47 6.87 -25.01 -0.17 -1.64 16 17 C -0.13 -1.74 6.95 -24.70 -0.17 -1.91 16 18 C -0.09 -1.57 5.42 -26.33 -0.14 -1.71 16 19 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 20 H 0.07 1.18 6.70 -51.93 -0.35 0.83 16 21 H 0.06 0.84 7.16 -51.93 -0.37 0.47 16 22 H 0.39 9.97 5.99 -40.82 -0.24 9.73 16 23 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 2.04 6.26 -51.93 -0.32 1.72 16 LS Contribution 258.04 15.07 3.89 3.89 Total: -1.00 -30.50 258.04 -6.44 -36.94 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.17 Total: 8.46 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.87 Total: -10.23 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.66 Total: -38.63 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.07 Total: -16.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.50 -6.44 -36.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306290857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.525 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds