Wall clock time and date at job start Sun Mar 29 2020 21:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.46955 * 119.99889 * 2 1 4 4 O 1.21654 * 120.00003 * 180.02562 * 3 2 1 5 5 N 1.34775 * 119.99865 * 0.02562 * 3 2 1 6 6 C 1.36816 * 120.00019 * 180.02562 * 5 3 2 7 7 H 1.07999 * 119.99799 * 0.02562 * 6 5 3 8 8 C 1.39071 * 120.00408 * 179.97438 * 6 5 3 9 9 N 1.31357 * 119.99857 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00490 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46669 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47330 * 119.99792 * 10 8 6 13 13 H 1.48497 * 109.47057 * 240.00215 * 10 8 6 14 14 C 1.33119 * 120.00283 * 180.02562 * 2 1 3 15 15 C 1.51446 * 126.33708 * 359.97438 * 14 2 1 16 16 C 1.54282 * 106.84905 * 180.33708 * 15 14 2 17 17 C 1.54987 * 103.74985 * 23.12444 * 16 15 14 18 18 C 1.51843 * 126.34512 * 179.97438 * 14 2 1 19 19 H 1.08996 * 109.47163 * 269.99673 * 1 2 3 20 20 H 1.09005 * 109.47072 * 30.00245 * 1 2 3 21 21 H 1.09003 * 109.46954 * 149.99519 * 1 2 3 22 22 H 0.97002 * 120.00454 * 359.97438 * 5 3 2 23 23 H 0.96997 * 119.99705 * 179.97438 * 9 8 6 24 24 H 1.08996 * 109.99044 * 299.68401 * 15 14 2 25 25 H 1.09005 * 109.98620 * 60.99350 * 15 14 2 26 26 H 1.08996 * 110.57285 * 141.69135 * 16 15 14 27 27 H 1.09005 * 110.57234 * 264.55907 * 16 15 14 28 28 H 1.08999 * 110.83018 * 204.70408 * 17 16 15 29 29 H 1.09001 * 110.83046 * 81.12560 * 17 16 15 30 30 H 1.09004 * 110.43923 * 274.96951 * 18 14 2 31 31 H 1.09001 * 110.44013 * 37.36016 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4583 1.2727 -0.0005 5 7 1.5678 2.4398 0.0005 6 6 2.2518 3.6247 0.0000 7 1 3.3318 3.6248 -0.0013 8 6 1.5565 4.8291 0.0000 9 7 0.2429 4.8291 0.0000 10 14 2.4904 6.4470 -0.0015 11 1 3.9504 6.1756 -0.0018 12 1 2.1308 7.2251 -1.2140 13 1 2.1326 7.2261 1.2110 14 6 2.1726 -1.1528 -0.0005 15 6 1.5649 -2.5400 -0.0006 16 6 2.7379 -3.5421 0.0074 17 6 3.9143 -2.7275 0.6028 18 6 3.6818 -1.3206 -0.0011 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 0.5978 2.4399 0.0005 23 1 -0.2420 5.6692 0.0004 24 1 0.9511 -2.6779 0.8895 25 1 0.9600 -2.6817 -0.8963 26 1 2.5058 -4.3984 0.6407 27 1 2.9713 -3.8667 -1.0067 28 1 4.8716 -3.1354 0.2784 29 1 3.8533 -2.6970 1.6907 30 1 4.0695 -1.2744 -1.0189 31 1 4.1500 -0.5559 0.6186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306290857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:32 Heat of formation + Delta-G solvation = -65.882693 kcal Electronic energy + Delta-G solvation = -13623.844794 eV Core-core repulsion = 11289.579275 eV Total energy + Delta-G solvation = -2334.265519 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54774 -38.60798 -36.01594 -34.38584 -33.06624 -29.70888 -28.47369 -27.17971 -24.86489 -21.88498 -21.35898 -20.15814 -18.62711 -17.30085 -16.79683 -16.47086 -16.06073 -15.41083 -15.23480 -14.42685 -14.02478 -13.86520 -13.58092 -13.24190 -13.10373 -12.94492 -12.89483 -12.38743 -12.16016 -12.01369 -11.87560 -11.66919 -11.56001 -11.40362 -10.15038 -10.07148 -9.57126 -8.52361 -5.97274 0.62497 1.39136 1.40156 1.54401 2.27727 2.46229 3.18419 3.28178 3.76735 3.88687 4.21830 4.23551 4.33424 4.44776 4.56988 4.79020 4.81757 4.92372 4.96659 5.02442 5.11344 5.17593 5.25859 5.32287 5.35747 5.48189 5.63423 5.80638 6.09394 6.57691 7.08087 7.53203 8.10132 8.65854 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061089 B = 0.007354 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.236465 B = 3806.333145 C = 4215.285576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.189 4.189 3 C 0.464 3.536 4 O -0.634 6.634 5 N -0.564 5.564 6 C -0.337 4.337 7 H 0.079 0.921 8 C -0.014 4.014 9 N -0.917 5.917 10 Si 0.998 3.002 11 H -0.274 1.274 12 H -0.268 1.268 13 H -0.268 1.268 14 C -0.066 4.066 15 C -0.089 4.089 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.101 4.101 19 H 0.075 0.925 20 H 0.050 0.950 21 H 0.094 0.906 22 H 0.397 0.603 23 H 0.280 0.720 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -13.314 0.271 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.255 3.745 4 O -0.524 6.524 5 N -0.199 5.199 6 C -0.466 4.466 7 H 0.097 0.903 8 C -0.214 4.214 9 N -0.558 5.558 10 Si 0.821 3.179 11 H -0.198 1.198 12 H -0.193 1.193 13 H -0.193 1.193 14 C -0.069 4.069 15 C -0.126 4.126 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.138 4.138 19 H 0.094 0.906 20 H 0.069 0.931 21 H 0.113 0.887 22 H 0.232 0.768 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.562 -13.124 0.269 13.138 hybrid contribution 0.011 1.353 -0.039 1.353 sum -0.551 -11.771 0.230 11.786 Atomic orbital electron populations 1.20682 0.89251 1.03106 1.02768 1.20960 0.97117 0.91319 1.09764 1.18766 0.87455 0.85109 0.83132 1.90518 1.15331 1.88032 1.58480 1.41916 1.09508 1.04745 1.63755 1.19768 0.92859 0.84150 1.49857 0.90276 1.26160 0.96607 1.02624 0.95983 1.69658 1.07006 1.29549 1.49571 0.84802 0.77919 0.76610 0.78560 1.19818 1.19269 1.19268 1.22911 0.96414 0.94499 0.93069 1.21309 0.98715 0.88994 1.03552 1.22383 0.93472 0.97396 1.01992 1.22559 0.99705 0.93367 1.00151 1.21561 0.93181 0.98183 1.00868 0.90648 0.93052 0.88750 0.76770 0.91009 0.89030 0.88958 0.88939 0.90559 0.90169 0.91445 0.91808 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 9.35 71.24 0.67 -2.57 16 2 C -0.19 -7.63 6.00 -18.73 -0.11 -7.74 16 3 C 0.46 24.61 7.69 86.53 0.67 25.28 16 4 O -0.63 -37.51 13.33 -4.20 -0.06 -37.57 16 5 N -0.56 -31.32 5.22 -310.43 -1.62 -32.94 16 6 C -0.34 -20.10 9.68 84.12 0.81 -19.28 16 7 H 0.08 5.01 7.15 -2.91 -0.02 4.99 16 8 C -0.01 -0.75 5.50 84.96 0.47 -0.28 16 9 N -0.92 -50.88 13.05 21.68 0.28 -50.59 16 10 Si 1.00 43.91 29.55 68.60 2.03 45.93 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 14 C -0.07 -2.29 6.13 -17.00 -0.10 -2.39 16 15 C -0.09 -2.03 5.53 30.52 0.17 -1.87 16 16 C -0.12 -2.21 6.87 31.71 0.22 -1.99 16 17 C -0.12 -2.96 6.95 31.91 0.22 -2.74 16 18 C -0.10 -3.59 5.42 30.85 0.17 -3.43 16 19 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 20 H 0.05 1.78 6.70 -2.38 -0.02 1.77 16 21 H 0.09 2.31 7.16 -2.39 -0.02 2.29 16 22 H 0.40 20.95 5.99 -92.71 -0.56 20.40 16 23 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 1.82 7.90 -2.38 -0.02 1.81 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.06 2.48 6.26 -2.39 -0.01 2.47 16 Total: -1.00 -69.42 258.04 4.38 -65.05 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.57 Total: 27.14 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 3.17 Total: -17.01 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.34 Total: -83.54 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.06 Total: -37.57 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.42 4.38 -65.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306290857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.837 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds