Wall clock time and date at job start Sun Mar 29 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47252 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47027 * 29.99612 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99740 * 3 2 1 7 7 C 1.37877 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47029 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46946 * 182.45424 * 10 9 7 12 12 C 1.46786 * 110.99992 * 302.34267 * 11 10 9 13 13 C 1.53002 * 109.87396 * 188.91784 * 12 11 10 14 14 C 1.53326 * 109.19831 * 297.71490 * 13 12 11 15 15 C 1.53232 * 108.49970 * 54.30115 * 14 13 12 16 16 C 1.52790 * 117.73087 * 93.90288 * 15 14 13 17 17 C 1.52754 * 117.77556 * 162.85142 * 15 14 13 18 18 C 1.47044 * 111.00115 * 66.56276 * 11 10 9 19 19 H 0.97002 * 120.00221 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47028 * 299.99279 * 9 7 2 21 21 H 1.08999 * 109.47315 * 59.99942 * 9 7 2 22 22 H 1.09007 * 109.46993 * 302.45214 * 10 9 7 23 23 H 1.08997 * 109.47245 * 62.44715 * 10 9 7 24 24 H 1.09000 * 109.40194 * 309.04068 * 12 11 10 25 25 H 1.09004 * 109.40010 * 68.79413 * 12 11 10 26 26 H 1.09001 * 109.50982 * 177.80494 * 13 12 11 27 27 H 1.09000 * 109.56602 * 57.66106 * 13 12 11 28 28 H 1.09004 * 109.63477 * 294.59952 * 14 13 12 29 29 H 1.09000 * 109.79922 * 174.10066 * 14 13 12 30 30 H 1.08998 * 117.50112 * 215.23903 * 16 15 14 31 31 H 1.09005 * 117.50119 * 0.29767 * 16 15 14 32 32 H 1.09008 * 117.50597 * 359.78267 * 17 15 14 33 33 H 1.08998 * 117.50711 * 144.80371 * 17 15 14 34 34 H 1.09000 * 109.56446 * 297.63123 * 18 11 10 35 35 H 1.08992 * 109.56842 * 57.86955 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0014 11 7 5.4893 -2.6370 0.0585 12 6 6.0619 -1.8863 -1.0654 13 6 7.5782 -2.0864 -1.1059 14 6 8.1948 -1.5302 0.1829 15 6 7.4938 -2.1835 1.3787 16 6 8.1345 -3.4319 1.9832 17 6 8.1831 -2.1022 2.7394 18 6 5.9644 -2.1106 1.3467 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6797 -0.8895 21 1 3.8746 -0.6808 0.8905 22 1 3.6224 -3.1639 0.8651 23 1 3.6949 -3.1366 -0.9131 24 1 5.6246 -2.2418 -1.9985 25 1 5.8396 -0.8262 -0.9435 26 1 7.9922 -1.5585 -1.9650 27 1 7.8040 -3.1496 -1.1883 28 1 8.0526 -0.4501 0.2205 29 1 9.2598 -1.7605 0.2121 30 1 7.4679 -4.2047 2.3660 31 1 9.0611 -3.7899 1.5342 32 1 9.1417 -1.5855 2.7881 33 1 7.5486 -1.9999 3.6198 34 1 5.6460 -1.0740 1.4571 35 1 5.5516 -2.7079 2.1597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306303598.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:35 Heat of formation + Delta-G solvation = 12.927821 kcal Electronic energy + Delta-G solvation = -14194.840940 eV Core-core repulsion = 11999.825996 eV Total energy + Delta-G solvation = -2195.014944 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.38087 -36.21218 -33.27119 -32.20204 -29.55549 -27.47851 -25.43026 -22.83949 -22.46301 -21.67277 -19.96008 -18.20807 -16.84890 -15.34790 -15.22717 -14.70444 -14.44649 -13.72768 -13.42959 -13.21902 -12.95780 -12.66925 -12.31047 -11.84258 -11.53415 -11.44338 -11.03539 -10.91115 -10.80358 -10.46545 -10.22787 -9.86957 -9.84578 -9.83477 -9.45903 -9.20814 -8.55619 -7.59466 -6.06922 -4.04911 3.27179 3.34874 3.38168 3.83474 4.42291 4.53552 4.73377 4.89805 5.04144 5.18355 5.26546 5.31659 5.49297 5.66408 5.70515 5.83590 5.96443 5.98138 6.01551 6.05620 6.12265 6.17372 6.22485 6.32647 6.39303 6.45498 6.56006 6.73715 7.18957 7.24948 7.53308 7.69176 7.86785 8.51279 8.98142 9.55769 11.06470 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041414 B = 0.008086 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.936684 B = 3461.825643 C = 3489.115240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.045 4.045 10 C 0.066 3.934 11 N -0.538 5.538 12 C 0.053 3.947 13 C -0.112 4.112 14 C -0.082 4.082 15 C -0.116 4.116 16 C -0.164 4.164 17 C -0.180 4.180 18 C 0.091 3.909 19 H 0.263 0.737 20 H 0.012 0.988 21 H 0.015 0.985 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.774 -3.269 1.556 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.084 4.084 10 C -0.061 4.061 11 N -0.262 5.262 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.201 4.201 17 C -0.218 4.218 18 C -0.037 4.037 19 H 0.073 0.927 20 H 0.031 0.969 21 H 0.034 0.966 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.767 -3.650 1.509 17.226 hybrid contribution -0.018 1.838 0.101 1.841 sum 16.748 -1.812 1.610 16.923 Atomic orbital electron populations 1.69915 1.06250 1.26863 1.51118 1.25029 0.94706 0.99093 0.94559 0.86790 0.80293 0.83792 0.78471 1.20313 1.21315 1.19276 1.21058 0.89277 0.94520 1.50786 0.90893 1.20155 0.97862 0.94162 0.96219 1.22158 0.83808 0.98275 1.01854 1.62305 1.09254 1.53125 1.01468 1.21993 0.94033 0.96678 0.94798 1.21576 0.95432 1.01506 0.96482 1.21176 0.98050 0.99345 0.93337 1.21467 0.94821 1.01589 0.93768 1.22907 1.02188 0.91242 1.03722 1.22967 1.02027 1.01394 0.95422 1.21621 0.90705 0.98831 0.92585 0.92729 0.96946 0.96650 0.91449 0.91327 0.91015 0.94569 0.92019 0.91322 0.91978 0.92179 0.88826 0.89363 0.89152 0.88934 0.93928 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.05 -1.10 3.32 -27.88 -0.09 -1.19 16 10 C 0.07 1.36 5.28 -3.82 -0.02 1.34 16 11 N -0.54 -9.56 4.86 -234.50 -1.14 -10.70 16 12 C 0.05 0.87 4.63 -3.89 -0.02 0.86 16 13 C -0.11 -1.48 6.11 -26.56 -0.16 -1.64 16 14 C -0.08 -1.04 5.76 -26.44 -0.15 -1.19 16 15 C -0.12 -1.59 2.11 -154.54 -0.33 -1.92 16 16 C -0.16 -1.96 9.92 -26.81 -0.27 -2.22 16 17 C -0.18 -2.11 10.00 -26.83 -0.27 -2.38 16 18 C 0.09 1.51 4.89 -3.67 -0.02 1.49 16 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 20 H 0.01 0.30 6.13 -51.93 -0.32 -0.02 16 21 H 0.02 0.38 5.57 -51.93 -0.29 0.09 16 22 H 0.07 1.39 8.10 -51.92 -0.42 0.97 16 23 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 25 H 0.04 0.65 6.83 -51.93 -0.35 0.30 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.79 6.56 -51.93 -0.34 0.45 16 35 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -30.17 273.07 -8.62 -38.80 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.95 Total: -2.16 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -1.75 Total: -20.21 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.37 Total: -38.01 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.17 -8.62 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306303598.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.726 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds