Wall clock time and date at job start Sun Mar 29 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47252 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47027 * 29.99612 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99740 * 3 2 1 7 7 C 1.37877 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47029 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46946 * 182.45424 * 10 9 7 12 12 C 1.46786 * 110.99992 * 302.34267 * 11 10 9 13 13 C 1.53002 * 109.87396 * 188.91784 * 12 11 10 14 14 C 1.53326 * 109.19831 * 297.71490 * 13 12 11 15 15 C 1.53232 * 108.49970 * 54.30115 * 14 13 12 16 16 C 1.52790 * 117.73087 * 93.90288 * 15 14 13 17 17 C 1.52754 * 117.77556 * 162.85142 * 15 14 13 18 18 C 1.47044 * 111.00115 * 66.56276 * 11 10 9 19 19 H 0.97002 * 120.00221 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47028 * 299.99279 * 9 7 2 21 21 H 1.08999 * 109.47315 * 59.99942 * 9 7 2 22 22 H 1.09007 * 109.46993 * 302.45214 * 10 9 7 23 23 H 1.08997 * 109.47245 * 62.44715 * 10 9 7 24 24 H 1.09000 * 109.40194 * 309.04068 * 12 11 10 25 25 H 1.09004 * 109.40010 * 68.79413 * 12 11 10 26 26 H 1.09001 * 109.50982 * 177.80494 * 13 12 11 27 27 H 1.09000 * 109.56602 * 57.66106 * 13 12 11 28 28 H 1.09004 * 109.63477 * 294.59952 * 14 13 12 29 29 H 1.09000 * 109.79922 * 174.10066 * 14 13 12 30 30 H 1.08998 * 117.50112 * 215.23903 * 16 15 14 31 31 H 1.09005 * 117.50119 * 0.29767 * 16 15 14 32 32 H 1.09008 * 117.50597 * 359.78267 * 17 15 14 33 33 H 1.08998 * 117.50711 * 144.80371 * 17 15 14 34 34 H 1.09000 * 109.56446 * 297.63123 * 18 11 10 35 35 H 1.08992 * 109.56842 * 57.86955 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0014 11 7 5.4893 -2.6370 0.0585 12 6 6.0619 -1.8863 -1.0654 13 6 7.5782 -2.0864 -1.1059 14 6 8.1948 -1.5302 0.1829 15 6 7.4938 -2.1835 1.3787 16 6 8.1345 -3.4319 1.9832 17 6 8.1831 -2.1022 2.7394 18 6 5.9644 -2.1106 1.3467 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6797 -0.8895 21 1 3.8746 -0.6808 0.8905 22 1 3.6224 -3.1639 0.8651 23 1 3.6949 -3.1366 -0.9131 24 1 5.6246 -2.2418 -1.9985 25 1 5.8396 -0.8262 -0.9435 26 1 7.9922 -1.5585 -1.9650 27 1 7.8040 -3.1496 -1.1883 28 1 8.0526 -0.4501 0.2205 29 1 9.2598 -1.7605 0.2121 30 1 7.4679 -4.2047 2.3660 31 1 9.0611 -3.7899 1.5342 32 1 9.1417 -1.5855 2.7881 33 1 7.5486 -1.9999 3.6198 34 1 5.6460 -1.0740 1.4571 35 1 5.5516 -2.7079 2.1597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306303598.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:35 Heat of formation + Delta-G solvation = -5.968066 kcal Electronic energy + Delta-G solvation = -14195.660327 eV Core-core repulsion = 11999.825996 eV Total energy + Delta-G solvation = -2195.834331 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.57980 -37.53462 -35.13262 -33.75541 -31.38031 -28.69491 -27.08885 -24.49615 -23.47244 -22.93916 -21.49872 -19.47817 -18.95122 -16.55619 -16.53088 -16.41576 -15.88932 -15.19816 -14.92718 -14.88224 -14.39377 -14.18042 -13.69746 -13.25747 -13.19080 -12.76066 -12.45475 -12.26284 -12.15879 -11.97860 -11.90137 -11.56697 -11.51584 -11.24033 -10.87293 -10.81496 -10.50728 -9.11467 -8.35500 -6.39652 1.27458 1.29244 1.40728 2.28707 2.77648 2.98849 3.26100 3.71410 3.85003 4.03765 4.11460 4.20080 4.36027 4.37110 4.53658 4.60903 4.71838 4.74489 4.81370 4.85895 4.91410 4.99551 5.04823 5.08122 5.14004 5.31929 5.33816 5.35431 5.39756 5.46631 5.53980 6.07605 6.25021 6.29850 6.68937 7.24908 8.81094 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041414 B = 0.008086 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.936684 B = 3461.825643 C = 3489.115240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.033 4.033 10 C 0.076 3.924 11 N -0.533 5.533 12 C 0.048 3.952 13 C -0.105 4.105 14 C -0.079 4.079 15 C -0.137 4.137 16 C -0.155 4.155 17 C -0.169 4.169 18 C 0.090 3.910 19 H 0.267 0.733 20 H 0.015 0.985 21 H 0.012 0.988 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.019 0.981 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.773 -2.659 1.557 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.072 4.072 10 C -0.052 4.052 11 N -0.255 5.255 12 C -0.081 4.081 13 C -0.142 4.142 14 C -0.116 4.116 15 C -0.137 4.137 16 C -0.191 4.191 17 C -0.206 4.206 18 C -0.038 4.038 19 H 0.076 0.924 20 H 0.033 0.967 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.037 0.963 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.785 -3.054 1.509 20.076 hybrid contribution -1.017 1.564 0.116 1.869 sum 18.767 -1.490 1.625 18.897 Atomic orbital electron populations 1.70057 1.08116 1.28194 1.52407 1.25967 0.95587 1.03269 0.94087 0.85688 0.79191 0.78718 0.79220 1.19009 1.20504 1.18045 1.21386 0.91749 0.93309 1.50522 0.94572 1.20023 0.94664 0.96598 0.95927 1.21936 0.86091 0.95820 1.01378 1.62349 1.06916 1.53559 1.02713 1.22128 0.96641 0.95279 0.94004 1.21545 0.92601 1.02202 0.97874 1.21191 0.99312 0.98849 0.92279 1.21431 0.92642 1.03930 0.95727 1.22962 1.02407 0.90792 1.02988 1.23053 1.02383 1.01114 0.94072 1.21635 0.93404 0.97085 0.91714 0.92370 0.96653 0.96963 0.92184 0.91646 0.91211 0.96309 0.89873 0.90873 0.92520 0.89569 0.89432 0.87505 0.87172 0.89148 0.96288 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.01 0.49 5.47 84.65 0.46 0.95 16 3 Si 0.95 45.62 27.47 68.60 1.88 47.51 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.03 -1.62 3.32 29.85 0.10 -1.52 16 10 C 0.08 3.15 5.28 86.31 0.46 3.61 16 11 N -0.53 -18.58 4.86 -895.82 -4.35 -22.93 16 12 C 0.05 1.50 4.63 86.33 0.40 1.90 16 13 C -0.10 -2.45 6.11 30.70 0.19 -2.27 16 14 C -0.08 -1.75 5.76 30.78 0.18 -1.57 16 15 C -0.14 -3.42 2.11 -52.20 -0.11 -3.53 16 16 C -0.15 -3.22 9.92 30.54 0.30 -2.92 16 17 C -0.17 -3.44 10.00 30.53 0.31 -3.13 16 18 C 0.09 2.92 4.89 86.33 0.42 3.34 16 19 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 20 H 0.02 0.73 6.13 -2.39 -0.01 0.72 16 21 H 0.01 0.60 5.57 -2.39 -0.01 0.59 16 22 H 0.06 2.55 8.10 -2.38 -0.02 2.53 16 23 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 25 H 0.02 0.65 6.83 -2.39 -0.02 0.64 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 29 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.02 0.70 6.56 -2.39 -0.02 0.69 16 35 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 Total: -1.00 -65.41 273.07 1.76 -63.66 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.98 Total: 8.08 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 2.95 Total: -36.35 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -4.05 Total: -82.90 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.51 kcal Total: -65.41 1.76 -63.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306303598.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.688 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds