Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.90069 * 2 1 4 4 N 1.40083 * 108.20662 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03368 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.92799 * 0.26543 * 4 3 2 7 7 C 1.35317 * 107.74264 * 359.57563 * 6 4 3 8 8 C 1.50700 * 126.03781 * 180.16347 * 7 6 4 9 9 N 1.46504 * 109.47038 * 260.30429 * 8 7 6 10 10 C 1.46497 * 119.99579 * 90.00010 * 9 8 7 11 11 C 1.36938 * 119.99987 * 270.00146 * 9 8 7 12 12 H 1.08000 * 120.00034 * 22.32166 * 11 9 8 13 13 C 1.38809 * 119.99918 * 202.32059 * 11 9 8 14 14 N 1.31617 * 120.00016 * 13.87421 * 13 11 9 15 15 Si 1.86802 * 120.00124 * 193.87364 * 13 11 9 16 16 H 1.48504 * 109.46951 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47197 * 119.99767 * 15 13 11 18 18 H 1.48497 * 109.47093 * 239.99981 * 15 13 11 19 19 H 1.09002 * 109.46701 * 89.97729 * 1 2 3 20 20 H 1.09008 * 109.47000 * 209.97400 * 1 2 3 21 21 H 1.08997 * 109.47367 * 329.97755 * 1 2 3 22 22 H 1.09004 * 109.46949 * 90.03233 * 5 4 3 23 23 H 1.09000 * 109.47370 * 210.02372 * 5 4 3 24 24 H 1.08994 * 109.47712 * 330.03407 * 5 4 3 25 25 H 1.07997 * 126.12557 * 179.73253 * 6 4 3 26 26 H 1.08992 * 109.47206 * 20.30582 * 8 7 6 27 27 H 1.09003 * 109.47035 * 140.30629 * 8 7 6 28 28 H 1.08997 * 109.46952 * 95.14424 * 10 9 8 29 29 H 1.09004 * 109.46864 * 215.14002 * 10 9 8 30 30 H 1.08994 * 109.47373 * 335.14113 * 10 9 8 31 31 H 0.97001 * 120.00496 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7898 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0069 7 6 2.3272 -1.1330 -0.0007 8 6 1.8600 -2.5658 -0.0009 9 7 1.4800 -2.9553 -1.3611 10 6 2.4778 -3.5373 -2.2620 11 6 0.1921 -2.7753 -1.7903 12 1 -0.4422 -2.0482 -1.3051 13 6 -0.2981 -3.5274 -2.8490 14 7 0.3603 -4.5895 -3.2623 15 14 -1.8924 -3.0321 -3.6872 16 1 -2.4340 -1.8110 -3.0386 17 1 -1.6318 -2.7565 -5.1230 18 1 -2.8788 -4.1354 -3.5661 19 1 -0.3633 0.0004 -1.0277 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3634 0.8897 0.5142 22 1 5.0836 1.7155 1.0262 23 1 5.6090 0.9984 -0.5158 24 1 4.5559 2.4334 -0.5146 25 1 4.4892 -1.3485 -0.0130 26 1 2.6655 -3.2107 0.3501 27 1 0.9991 -2.6673 0.6600 28 1 2.4188 -4.6247 -2.2157 29 1 2.2834 -3.2060 -3.2821 30 1 3.4736 -3.2143 -1.9586 31 1 0.0180 -5.1148 -4.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306338897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = 100.976091 kcal Electronic energy + Delta-G solvation = -13931.546291 eV Core-core repulsion = 11636.809063 eV Total energy + Delta-G solvation = -2294.737228 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61853 -35.52614 -33.37257 -31.48572 -29.74742 -28.92603 -26.22444 -25.70363 -24.01174 -21.19779 -20.09255 -18.77678 -16.51648 -16.10383 -15.22474 -14.65662 -13.81004 -13.53900 -13.36031 -12.94610 -12.84327 -12.62191 -12.06632 -11.68219 -11.54493 -11.37260 -11.15271 -10.79860 -10.52816 -10.33718 -9.91197 -9.75550 -9.66822 -8.62727 -8.45957 -7.71175 -6.61950 -5.60754 -3.04955 2.41451 2.98857 3.41708 3.44816 3.52203 3.53466 4.61942 4.83595 5.26260 5.29556 5.45714 5.49896 5.55760 5.84229 5.88175 6.09850 6.25818 6.31731 6.59116 6.62703 6.79419 6.87894 6.93712 7.33503 7.48201 7.57517 7.82032 7.93916 8.30806 8.51698 9.35843 10.00531 10.49956 11.44478 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.009698 C = 0.008600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.894541 B = 2886.485392 C = 3254.987686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.094 3.906 3 N -0.316 5.316 4 N -0.391 5.391 5 C 0.110 3.890 6 C 0.040 3.960 7 C -0.222 4.222 8 C 0.219 3.781 9 N -0.595 5.595 10 C 0.166 3.834 11 C -0.246 4.246 12 H 0.075 0.925 13 C -0.004 4.004 14 N -0.910 5.910 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.292 1.292 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.163 0.837 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.037 0.963 30 H -0.006 1.006 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 7.774 6.531 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 N -0.140 5.140 4 N -0.175 5.175 5 C -0.032 4.032 6 C -0.104 4.104 7 C -0.236 4.236 8 C 0.091 3.909 9 N -0.317 5.317 10 C 0.021 3.979 11 C -0.375 4.375 12 H 0.093 0.907 13 C -0.201 4.201 14 N -0.557 5.557 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.219 1.219 19 H 0.100 0.900 20 H 0.098 0.902 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.181 0.819 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.912 8.990 6.387 13.015 hybrid contribution -0.569 -0.601 -0.767 1.129 sum 6.343 8.389 5.620 11.924 Atomic orbital electron populations 1.20216 0.87037 1.01993 1.03356 1.22173 0.96722 0.90338 0.98020 1.77151 0.86455 1.23105 1.27246 1.48227 1.05132 1.04664 1.59467 1.21642 0.84264 0.94917 1.02358 1.22226 0.99282 0.84435 1.04494 1.21379 0.91244 0.99422 1.11563 1.19043 0.97281 0.86817 0.87791 1.43913 1.07299 1.72200 1.08292 1.20734 0.86811 0.96965 0.93393 1.19407 0.88791 1.15172 1.14173 0.90701 1.24980 0.97994 0.96049 1.01082 1.70086 1.39955 1.16426 1.29199 0.86279 0.83539 0.77857 0.79518 1.20224 1.21897 1.21877 0.90015 0.90237 0.92377 0.91652 0.90170 0.90054 0.81950 0.94123 0.92691 0.95156 0.94460 0.98786 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 8.99 36.00 0.32 -0.89 16 2 C 0.09 1.88 7.22 -82.40 -0.59 1.28 16 3 N -0.32 -6.19 12.58 33.67 0.42 -5.77 16 4 N -0.39 -6.55 4.01 -68.16 -0.27 -6.83 16 5 C 0.11 1.22 11.47 59.85 0.69 1.90 16 6 C 0.04 0.69 11.40 -17.22 -0.20 0.50 16 7 C -0.22 -4.42 5.68 -105.05 -0.60 -5.02 16 8 C 0.22 4.64 5.84 -5.19 -0.03 4.61 16 9 N -0.60 -15.15 2.91 -182.51 -0.53 -15.68 16 10 C 0.17 4.18 8.98 59.85 0.54 4.72 16 11 C -0.25 -6.72 9.64 -15.06 -0.15 -6.86 16 12 H 0.08 1.95 5.26 -52.49 -0.28 1.67 16 13 C 0.00 -0.11 5.08 -17.43 -0.09 -0.19 16 14 N -0.91 -27.00 10.72 55.49 0.59 -26.40 16 15 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H 0.08 1.58 7.47 -51.93 -0.39 1.19 16 20 H 0.08 1.39 7.11 -51.92 -0.37 1.03 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 26 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.05 1.15 7.49 -51.93 -0.39 0.76 16 28 H 0.03 0.82 7.35 -51.93 -0.38 0.44 16 29 H 0.04 1.02 7.32 -51.93 -0.38 0.64 16 30 H -0.01 -0.14 8.03 -51.93 -0.42 -0.56 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -32.67 262.47 -5.23 -37.90 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.27 Total: -4.35 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.10 Total: 0.05 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.21 Total: -54.67 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.67 -5.23 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.875 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds