Wall clock time and date at job start Sun Mar 29 2020 21:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48496 * 109.47028 * 240.00034 * 3 2 1 5 5 H 1.48505 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47339 * 119.99870 * 3 2 1 7 7 C 1.40051 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99694 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00348 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99814 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00385 * 179.97438 * 9 7 2 12 12 C 1.47575 * 134.49494 * 179.97438 * 11 9 7 13 13 C 1.53946 * 86.11735 * 155.36628 * 12 11 9 14 14 C 1.52999 * 113.74232 * 137.95357 * 13 12 11 15 15 C 1.53786 * 113.61361 * 179.97438 * 14 13 12 16 16 C 1.53781 * 87.17350 * 220.06273 * 15 14 13 17 17 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 18 18 C 1.47582 * 134.48907 * 0.02562 * 11 9 7 19 19 H 0.96993 * 119.99957 * 0.02562 * 1 2 3 20 20 H 1.09004 * 113.76646 * 41.07007 * 12 11 9 21 21 H 1.08993 * 113.77498 * 269.66731 * 12 11 9 22 22 H 1.09002 * 113.74240 * 269.15788 * 13 12 11 23 23 H 1.08993 * 112.90825 * 311.25157 * 14 13 12 24 24 H 1.09002 * 113.61357 * 105.47190 * 15 14 13 25 25 H 1.09002 * 113.61608 * 334.65352 * 15 14 13 26 26 H 1.09001 * 113.61695 * 139.93969 * 16 15 14 27 27 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 28 28 H 1.08997 * 113.61668 * 89.11298 * 17 16 15 29 29 H 1.08998 * 113.61674 * 219.93807 * 17 16 15 30 30 H 1.08993 * 113.77284 * 90.33576 * 18 11 9 31 31 H 1.09004 * 113.76837 * 318.93064 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4806 -0.0004 11 7 1.9490 -3.6477 0.0005 12 6 1.5545 -5.0697 0.0010 13 6 2.9275 -5.3427 -0.6397 14 6 3.6382 -6.5732 -0.0726 15 6 5.0090 -6.8434 -0.7151 16 6 4.6465 -8.3374 -0.6786 17 6 3.1725 -7.8998 -0.7001 18 6 3.3779 -4.0170 0.0010 19 1 -0.4850 0.8400 -0.0004 20 1 0.7121 -5.2921 -0.6540 21 1 1.4430 -5.4945 0.9986 22 1 2.9148 -5.3239 -1.7294 23 1 3.6557 -6.5884 1.0171 24 1 5.8509 -6.5826 -0.0736 25 1 5.1052 -6.4420 -1.7239 26 1 4.9530 -8.8831 -1.5711 27 1 4.9406 -8.8356 0.2452 28 1 2.7651 -7.7867 -1.7047 29 1 2.5314 -8.4926 -0.0477 30 1 3.8015 -4.1328 0.9986 31 1 3.9917 -3.3986 -0.6540 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306371553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:20 Heat of formation + Delta-G solvation = 7.934207 kcal Electronic energy + Delta-G solvation = -13544.977769 eV Core-core repulsion = 11213.913191 eV Total energy + Delta-G solvation = -2331.064578 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60574 -37.54838 -35.45207 -32.44419 -29.08028 -26.54127 -25.78510 -24.82732 -24.29399 -20.50658 -19.37598 -18.68366 -16.64810 -15.58895 -15.41344 -15.27222 -14.27153 -13.87069 -13.30438 -12.63818 -12.40811 -12.37407 -11.98970 -11.88868 -11.67108 -11.13434 -11.07064 -10.80070 -10.61200 -10.42925 -10.39380 -10.15451 -9.83505 -9.68125 -8.83776 -7.59509 -7.18715 -6.17506 -4.62541 3.16563 3.20817 3.23157 4.06883 4.42799 4.53702 4.56409 4.73866 4.84524 4.88556 5.45967 5.46311 5.58230 5.73226 5.79522 5.81969 5.90442 5.96590 6.03696 6.03874 6.14204 6.27426 6.33758 6.39894 6.59719 6.86766 6.88174 7.44868 8.12785 8.50293 9.03195 9.63489 10.59908 10.79486 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062210 B = 0.006851 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.978844 B = 4086.269698 C = 4462.566485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.577 3.423 10 O -0.577 6.577 11 N -0.664 5.664 12 C 0.112 3.888 13 C -0.115 4.115 14 C -0.100 4.100 15 C -0.135 4.135 16 C -0.144 4.144 17 C -0.136 4.136 18 C 0.120 3.880 19 H 0.269 0.731 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -11.441 -0.994 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.384 3.616 10 O -0.460 6.460 11 N -0.405 5.405 12 C -0.012 4.012 13 C -0.134 4.134 14 C -0.119 4.119 15 C -0.172 4.172 16 C -0.182 4.182 17 C -0.173 4.173 18 C -0.005 4.005 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.869 -11.099 -0.996 14.242 hybrid contribution 0.522 0.796 0.094 0.956 sum 9.390 -10.303 -0.902 13.970 Atomic orbital electron populations 1.70013 1.07087 1.27433 1.35347 1.25733 0.94646 1.00295 0.92636 0.86400 0.79794 0.80895 0.79467 1.19245 1.20481 1.19251 1.20788 0.93530 0.88925 1.54188 0.91490 1.18058 0.86539 0.81036 0.75970 1.90608 1.13894 1.85770 1.55713 1.50226 1.05931 1.04089 1.80268 1.22706 0.95936 0.84072 0.98515 1.23233 0.96425 0.93655 1.00086 1.22542 0.95649 0.93970 0.99721 1.22899 0.97206 0.95827 1.01303 1.22824 0.97111 0.96698 1.01551 1.22932 0.96090 0.96946 1.01339 1.22715 0.86662 0.92502 0.98636 0.91998 0.91988 0.92318 0.89013 0.89262 0.91737 0.90130 0.91904 0.90564 0.90171 0.91770 0.92123 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.74 11.83 55.55 0.66 -23.08 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.59 29.56 -169.99 -5.02 15.56 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.54 -15.84 9.33 -35.63 -0.33 -16.18 16 8 H 0.07 1.82 7.67 -52.49 -0.40 1.42 16 9 C 0.58 17.48 7.98 -12.99 -0.10 17.38 16 10 O -0.58 -19.81 15.75 5.19 0.08 -19.73 16 11 N -0.66 -16.09 3.61 -180.02 -0.65 -16.74 16 12 C 0.11 2.17 8.40 -2.98 -0.03 2.14 16 13 C -0.11 -1.78 3.56 -89.68 -0.32 -2.10 16 14 C -0.10 -1.20 3.39 -89.71 -0.30 -1.51 16 15 C -0.13 -1.41 7.64 -25.92 -0.20 -1.61 16 16 C -0.14 -1.36 8.08 -25.92 -0.21 -1.57 16 17 C -0.14 -1.44 7.65 -25.82 -0.20 -1.64 16 18 C 0.12 2.20 8.02 -2.96 -0.02 2.18 16 19 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 21 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 22 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -35.09 265.11 -7.35 -42.44 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.60 Total: -1.93 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.81 Total: -0.50 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.01 Total: -39.82 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.08 Total: -19.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.09 -7.35 -42.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306371553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.374 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds