Wall clock time and date at job start Sun Mar 29 2020 21:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48496 * 109.47028 * 240.00034 * 3 2 1 5 5 H 1.48505 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47339 * 119.99870 * 3 2 1 7 7 C 1.40051 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99694 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00348 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99814 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00385 * 179.97438 * 9 7 2 12 12 C 1.47575 * 134.49494 * 179.97438 * 11 9 7 13 13 C 1.53946 * 86.11735 * 155.36628 * 12 11 9 14 14 C 1.52999 * 113.74232 * 137.95357 * 13 12 11 15 15 C 1.53786 * 113.61361 * 179.97438 * 14 13 12 16 16 C 1.53781 * 87.17350 * 220.06273 * 15 14 13 17 17 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 18 18 C 1.47582 * 134.48907 * 0.02562 * 11 9 7 19 19 H 0.96993 * 119.99957 * 0.02562 * 1 2 3 20 20 H 1.09004 * 113.76646 * 41.07007 * 12 11 9 21 21 H 1.08993 * 113.77498 * 269.66731 * 12 11 9 22 22 H 1.09002 * 113.74240 * 269.15788 * 13 12 11 23 23 H 1.08993 * 112.90825 * 311.25157 * 14 13 12 24 24 H 1.09002 * 113.61357 * 105.47190 * 15 14 13 25 25 H 1.09002 * 113.61608 * 334.65352 * 15 14 13 26 26 H 1.09001 * 113.61695 * 139.93969 * 16 15 14 27 27 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 28 28 H 1.08997 * 113.61668 * 89.11298 * 17 16 15 29 29 H 1.08998 * 113.61674 * 219.93807 * 17 16 15 30 30 H 1.08993 * 113.77284 * 90.33576 * 18 11 9 31 31 H 1.09004 * 113.76837 * 318.93064 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4806 -0.0004 11 7 1.9490 -3.6477 0.0005 12 6 1.5545 -5.0697 0.0010 13 6 2.9275 -5.3427 -0.6397 14 6 3.6382 -6.5732 -0.0726 15 6 5.0090 -6.8434 -0.7151 16 6 4.6465 -8.3374 -0.6786 17 6 3.1725 -7.8998 -0.7001 18 6 3.3779 -4.0170 0.0010 19 1 -0.4850 0.8400 -0.0004 20 1 0.7121 -5.2921 -0.6540 21 1 1.4430 -5.4945 0.9986 22 1 2.9148 -5.3239 -1.7294 23 1 3.6557 -6.5884 1.0171 24 1 5.8509 -6.5826 -0.0736 25 1 5.1052 -6.4420 -1.7239 26 1 4.9530 -8.8831 -1.5711 27 1 4.9406 -8.8356 0.2452 28 1 2.7651 -7.7867 -1.7047 29 1 2.5314 -8.4926 -0.0477 30 1 3.8015 -4.1328 0.9986 31 1 3.9917 -3.3986 -0.6540 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306371553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:20 Heat of formation + Delta-G solvation = -15.827753 kcal Electronic energy + Delta-G solvation = -13546.008165 eV Core-core repulsion = 11213.913191 eV Total energy + Delta-G solvation = -2332.094974 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98401 -39.00589 -37.41581 -34.67090 -30.83809 -28.43008 -27.06709 -26.00323 -25.73535 -22.04325 -20.53526 -20.23360 -18.60974 -17.65918 -16.69920 -16.39051 -16.06134 -15.70504 -14.70801 -14.25803 -13.92145 -13.54378 -13.49420 -13.24277 -13.14390 -12.87589 -12.75762 -12.51490 -12.26626 -12.05382 -11.62438 -11.31171 -10.96376 -10.95142 -10.83146 -9.85326 -9.15791 -8.32874 -6.90269 1.36770 1.41167 1.53372 2.20152 2.40132 2.67503 3.36011 3.51484 3.86464 3.94283 4.05519 4.28930 4.34349 4.43673 4.57638 4.63720 4.70836 4.79108 4.99094 5.00985 5.02527 5.16788 5.20377 5.24992 5.26864 5.40701 5.52848 5.74836 5.93684 6.42323 6.81634 7.57005 8.40700 8.63107 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062210 B = 0.006851 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.978844 B = 4086.269698 C = 4462.566485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.553 3.447 10 O -0.638 6.638 11 N -0.685 5.685 12 C 0.102 3.898 13 C -0.083 4.083 14 C -0.101 4.101 15 C -0.132 4.132 16 C -0.134 4.134 17 C -0.137 4.137 18 C 0.117 3.883 19 H 0.276 0.724 20 H 0.047 0.953 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 -11.825 -0.974 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.603 4.603 8 H 0.102 0.898 9 C 0.361 3.639 10 O -0.526 6.526 11 N -0.423 5.423 12 C -0.021 4.021 13 C -0.102 4.102 14 C -0.120 4.120 15 C -0.169 4.169 16 C -0.172 4.172 17 C -0.175 4.175 18 C -0.006 4.006 19 H 0.086 0.914 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.639 -11.554 -0.977 16.429 hybrid contribution -0.328 0.805 0.097 0.875 sum 11.311 -10.749 -0.881 15.629 Atomic orbital electron populations 1.70192 1.09689 1.29194 1.36322 1.27078 0.95592 1.05114 0.91064 0.85011 0.78195 0.74279 0.80420 1.17648 1.19544 1.17664 1.21303 0.94494 0.89690 1.54774 0.89804 1.18487 0.86230 0.83295 0.75870 1.90538 1.16297 1.87372 1.58414 1.50182 1.08971 1.04479 1.78707 1.23019 0.97965 0.81533 0.99590 1.22991 0.93337 0.94011 0.99828 1.22562 0.96763 0.92608 1.00069 1.22903 0.96154 0.96594 1.01267 1.22791 0.95568 0.96135 1.02677 1.22957 0.97349 0.96014 1.01145 1.23051 0.83687 0.93677 1.00196 0.91398 0.93470 0.90881 0.88860 0.88759 0.90791 0.90105 0.90827 0.89460 0.90409 0.91313 0.90155 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.44 11.83 21.84 0.26 -52.18 16 2 C 0.03 1.52 5.50 85.31 0.47 1.99 16 3 Si 1.00 42.02 29.56 68.60 2.03 44.05 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.57 -33.92 9.33 24.83 0.23 -33.69 16 8 H 0.08 4.54 7.67 -2.91 -0.02 4.51 16 9 C 0.55 34.77 7.98 86.36 0.69 35.46 16 10 O -0.64 -46.09 15.75 -4.33 -0.07 -46.15 16 11 N -0.68 -33.70 3.61 -841.70 -3.04 -36.74 16 12 C 0.10 3.98 8.40 86.48 0.73 4.71 16 13 C -0.08 -2.44 3.56 -10.12 -0.04 -2.48 16 14 C -0.10 -2.16 3.39 -10.20 -0.03 -2.20 16 15 C -0.13 -2.31 7.64 31.12 0.24 -2.07 16 16 C -0.13 -2.05 8.08 31.12 0.25 -1.80 16 17 C -0.14 -2.55 7.65 31.18 0.24 -2.32 16 18 C 0.12 4.16 8.02 86.49 0.69 4.86 16 19 H 0.28 15.81 8.29 -92.71 -0.77 15.04 16 20 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.43 8.10 -2.39 -0.02 1.42 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 2.56 8.10 -2.39 -0.02 2.55 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -79.70 265.11 3.75 -75.95 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.10 Total: 12.60 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 3.47 Total: 2.47 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.78 Total: -88.92 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.07 Total: -46.15 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -79.70 3.75 -75.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306371553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.123 kcal (2) G-P(sol) polarization free energy of solvation -79.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds