Wall clock time and date at job start Sun Mar 29 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09004 * 115.55565 * 325.58393 * 13 11 10 15 15 C 1.53117 * 117.51575 * 111.31885 * 13 11 10 16 16 C 1.52457 * 117.51315 * 179.85147 * 13 11 10 17 17 C 1.53263 * 128.58650 * 134.95114 * 16 13 11 18 18 C 1.53886 * 86.88204 * 194.88450 * 17 16 13 19 19 C 1.53257 * 128.58856 * 10.14712 * 16 13 11 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 24 24 H 1.09001 * 117.51265 * 214.89933 * 15 13 11 25 25 H 1.09000 * 117.51701 * 359.95888 * 15 13 11 26 26 H 1.08994 * 113.64138 * 309.38088 * 17 16 13 27 27 H 1.08998 * 113.64425 * 80.38370 * 17 16 13 28 28 H 1.09003 * 113.59080 * 270.39210 * 18 17 16 29 29 H 1.09001 * 113.58761 * 139.57007 * 18 17 16 30 30 H 1.08999 * 113.64215 * 279.61594 * 19 16 13 31 31 H 1.08999 * 113.64407 * 50.52380 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.6559 -5.8612 -0.5350 15 6 2.8170 -6.8817 1.2897 16 6 2.1633 -7.4426 0.0302 17 6 2.5898 -8.6507 -0.8110 18 6 1.2670 -9.3099 -0.3824 19 6 0.7120 -7.8895 -0.1762 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 3.1568 -3.4352 0.0096 24 1 3.7944 -7.2759 1.5679 25 1 2.1642 -6.6139 2.1205 26 1 2.6477 -8.4411 -1.8790 27 1 3.4753 -9.1586 -0.4291 28 1 1.3453 -9.8857 0.5399 29 1 0.7734 -9.8590 -1.1842 30 1 0.0922 -7.7872 0.7146 31 1 0.2468 -7.4668 -1.0668 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306389568.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:04 Heat of formation + Delta-G solvation = -1.720475 kcal Electronic energy + Delta-G solvation = -13331.742911 eV Core-core repulsion = 11000.259675 eV Total energy + Delta-G solvation = -2331.483236 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87188 -37.80194 -34.12527 -33.40989 -32.22873 -27.46308 -25.55206 -24.06044 -22.96650 -21.83174 -19.51959 -18.24717 -17.02270 -15.81373 -15.43632 -15.11584 -14.76180 -14.36644 -13.92439 -13.31043 -12.44034 -12.29527 -12.03057 -11.81160 -11.64826 -11.44275 -11.29459 -10.98300 -10.85878 -10.30920 -10.19428 -9.91107 -9.57006 -9.38532 -8.89526 -8.70955 -7.82927 -6.15032 -4.21997 3.18818 3.26328 3.30899 3.32546 3.94008 4.08732 4.35606 4.69175 4.75139 4.92657 4.99685 5.08860 5.20930 5.45215 5.62592 5.67364 5.79939 5.84725 5.89825 5.93762 6.15185 6.31025 6.43948 6.53443 7.33742 7.49085 7.54166 7.69856 7.99277 8.68482 8.81327 9.17161 9.44997 10.95231 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.079185 B = 0.005852 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.517000 B = 4783.370740 C = 4982.834950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.710 5.710 11 C 0.526 3.474 12 O -0.552 6.552 13 C -0.175 4.175 14 H 0.117 0.883 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.081 4.081 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -14.122 0.083 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.358 5.358 11 C 0.311 3.689 12 O -0.432 6.432 13 C -0.196 4.196 14 H 0.135 0.865 15 C -0.163 4.163 16 C -0.131 4.131 17 C -0.136 4.136 18 C -0.180 4.180 19 C -0.118 4.118 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.223 0.777 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.730 -14.104 0.079 15.224 hybrid contribution 1.014 1.229 -0.009 1.593 sum 6.744 -12.875 0.071 14.535 Atomic orbital electron populations 1.69966 1.06121 1.27394 1.48902 1.24950 0.94910 0.99436 0.94700 0.86471 0.79411 0.82306 0.78689 1.20062 1.21058 1.20069 1.21203 0.93241 0.90503 1.53234 0.91957 1.19089 0.88331 0.81988 0.97644 1.46414 1.11079 1.05999 1.72280 1.19525 0.88475 0.83582 0.77312 1.90633 1.16618 1.84841 1.51064 1.22254 1.01304 0.91920 1.04113 0.86531 1.22761 1.01826 1.00811 0.90870 1.22234 0.98186 0.92199 1.00463 1.22487 0.97603 0.94229 0.99253 1.22819 0.97050 0.96920 1.01203 1.22288 0.93477 0.93347 1.02678 0.92403 0.95628 0.95605 0.77723 0.88111 0.88200 0.89777 0.91572 0.90389 0.91517 0.91382 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 10 N -0.71 -15.55 5.55 -61.47 -0.34 -15.89 16 11 C 0.53 10.97 7.61 -10.98 -0.08 10.88 16 12 O -0.55 -13.50 15.14 5.56 0.08 -13.42 16 13 C -0.17 -2.70 6.19 -91.99 -0.57 -3.27 16 14 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.13 -1.66 10.24 -26.88 -0.28 -1.93 16 16 C -0.13 -1.81 2.88 -154.73 -0.45 -2.26 16 17 C -0.10 -1.08 8.10 -26.13 -0.21 -1.30 16 18 C -0.14 -1.55 8.08 -25.81 -0.21 -1.76 16 19 C -0.08 -1.17 6.47 -26.14 -0.17 -1.34 16 20 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.39 7.38 8.32 -40.82 -0.34 7.04 16 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 268.26 15.07 4.04 4.04 Total: -1.00 -31.61 268.26 -7.43 -39.04 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.52 Total: 3.75 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.41 Total: -7.84 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.40 Total: -41.59 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.61 -7.43 -39.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389568.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.318 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds