Wall clock time and date at job start Sun Mar 29 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09004 * 115.55565 * 325.58393 * 13 11 10 15 15 C 1.53117 * 117.51575 * 111.31885 * 13 11 10 16 16 C 1.52457 * 117.51315 * 179.85147 * 13 11 10 17 17 C 1.53263 * 128.58650 * 134.95114 * 16 13 11 18 18 C 1.53886 * 86.88204 * 194.88450 * 17 16 13 19 19 C 1.53257 * 128.58856 * 10.14712 * 16 13 11 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 24 24 H 1.09001 * 117.51265 * 214.89933 * 15 13 11 25 25 H 1.09000 * 117.51701 * 359.95888 * 15 13 11 26 26 H 1.08994 * 113.64138 * 309.38088 * 17 16 13 27 27 H 1.08998 * 113.64425 * 80.38370 * 17 16 13 28 28 H 1.09003 * 113.59080 * 270.39210 * 18 17 16 29 29 H 1.09001 * 113.58761 * 139.57007 * 18 17 16 30 30 H 1.08999 * 113.64215 * 279.61594 * 19 16 13 31 31 H 1.08999 * 113.64407 * 50.52380 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.6559 -5.8612 -0.5350 15 6 2.8170 -6.8817 1.2897 16 6 2.1633 -7.4426 0.0302 17 6 2.5898 -8.6507 -0.8110 18 6 1.2670 -9.3099 -0.3824 19 6 0.7120 -7.8895 -0.1762 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 3.1568 -3.4352 0.0096 24 1 3.7944 -7.2759 1.5679 25 1 2.1642 -6.6139 2.1205 26 1 2.6477 -8.4411 -1.8790 27 1 3.4753 -9.1586 -0.4291 28 1 1.3453 -9.8857 0.5399 29 1 0.7734 -9.8590 -1.1842 30 1 0.0922 -7.7872 0.7146 31 1 0.2468 -7.4668 -1.0668 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306389568.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:04 Heat of formation + Delta-G solvation = -23.087390 kcal Electronic energy + Delta-G solvation = -13332.669450 eV Core-core repulsion = 11000.259675 eV Total energy + Delta-G solvation = -2332.409775 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21132 -39.28814 -36.12843 -34.63743 -34.22773 -29.53896 -26.55971 -25.80652 -23.94820 -23.60542 -21.21062 -19.44645 -18.73552 -17.60253 -17.11182 -16.31878 -16.18424 -16.03004 -15.56971 -14.96317 -14.13429 -14.00286 -13.62400 -13.19684 -13.00781 -12.91999 -12.68698 -12.40677 -12.29226 -12.23398 -11.53936 -11.23232 -10.99002 -10.81125 -10.74821 -10.51581 -9.83432 -8.31000 -6.48482 1.41851 1.46429 1.54754 1.63277 2.29883 2.52603 2.82922 3.03667 3.52571 3.73019 3.84274 3.92956 3.99913 4.24029 4.53719 4.66237 4.80653 4.87424 4.91900 5.01615 5.11831 5.12192 5.19332 5.20179 5.42659 5.47066 5.54843 5.68659 5.82539 6.62373 6.91840 7.21249 7.49600 8.81242 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.079185 B = 0.005852 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.517000 B = 4783.370740 C = 4982.834950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.706 5.706 11 C 0.519 3.481 12 O -0.598 6.598 13 C -0.187 4.187 14 H 0.149 0.851 15 C -0.106 4.106 16 C -0.138 4.138 17 C -0.083 4.083 18 C -0.127 4.127 19 C -0.101 4.101 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.408 0.592 24 H 0.143 0.857 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.908 -14.980 0.131 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.355 5.355 11 C 0.307 3.693 12 O -0.480 6.480 13 C -0.207 4.207 14 H 0.166 0.834 15 C -0.143 4.143 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.164 4.164 19 C -0.138 4.138 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.243 0.757 24 H 0.161 0.839 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.905 -14.995 0.128 17.441 hybrid contribution -0.067 1.446 -0.009 1.447 sum 8.839 -13.550 0.119 16.178 Atomic orbital electron populations 1.70137 1.08367 1.28709 1.49862 1.26103 0.95788 1.04020 0.93694 0.85170 0.77890 0.76370 0.79555 1.18579 1.20973 1.18579 1.21592 0.94309 0.90566 1.53160 0.89812 1.18526 0.88717 0.84479 0.93843 1.46181 1.11129 1.05459 1.72752 1.20576 0.89006 0.84355 0.75367 1.90611 1.19187 1.85515 1.52668 1.22201 1.01086 0.90239 1.07220 0.83386 1.22902 1.03341 0.98645 0.89378 1.22567 0.97893 0.91929 1.01488 1.22481 0.98532 0.92060 0.98974 1.22785 0.96538 0.94633 1.02435 1.22340 0.94011 0.96880 1.00620 0.92188 0.99713 0.99712 0.75671 0.83885 0.89925 0.89426 0.88652 0.88784 0.90230 0.93546 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.82 29.54 68.60 2.03 44.84 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -31.20 9.28 25.60 0.24 -30.96 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 15.26 5.43 85.63 0.46 15.73 16 10 N -0.71 -31.61 5.55 -466.79 -2.59 -34.20 16 11 C 0.52 22.20 7.61 87.66 0.67 22.86 16 12 O -0.60 -31.01 15.14 -3.01 -0.05 -31.06 16 13 C -0.19 -5.47 6.19 -11.68 -0.07 -5.54 16 14 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 15 C -0.11 -2.51 10.24 30.50 0.31 -2.20 16 16 C -0.14 -3.59 2.88 -52.32 -0.15 -3.74 16 17 C -0.08 -1.53 8.10 30.98 0.25 -1.28 16 18 C -0.13 -2.45 8.08 31.19 0.25 -2.20 16 19 C -0.10 -2.96 6.47 30.98 0.20 -2.76 16 20 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 21 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 22 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 23 H 0.41 15.16 8.32 -92.71 -0.77 14.39 16 24 H 0.14 2.24 8.14 -2.39 -0.02 2.23 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -72.66 268.26 2.64 -70.02 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.34 Total: 16.87 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 2.62 Total: -9.43 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.30 Total: -91.24 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.06 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.66 2.64 -70.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389568.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.930 kcal (2) G-P(sol) polarization free energy of solvation -72.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds