Wall clock time and date at job start Sun Mar 29 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47362 * 239.99918 * 3 2 1 5 5 H 1.48504 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47457 * 119.99508 * 3 2 1 7 7 C 1.37882 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99584 * 0.02562 * 7 2 1 10 10 N 1.46511 * 109.46794 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99734 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99677 * 179.97438 * 11 10 9 14 14 H 1.09004 * 115.58042 * 34.37614 * 13 11 10 15 15 C 1.53124 * 117.51296 * 248.60633 * 13 11 10 16 16 C 1.52463 * 59.91303 * 252.57250 * 15 13 11 17 17 C 1.53253 * 128.58661 * 242.37621 * 16 15 13 18 18 C 1.53884 * 86.88536 * 194.88792 * 17 16 15 19 19 C 1.53255 * 128.58200 * 117.57682 * 16 15 13 20 20 H 0.96998 * 119.99907 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47357 * 60.00256 * 9 7 2 22 22 H 1.09000 * 109.47167 * 299.99741 * 9 7 2 23 23 H 0.96999 * 119.99487 * 359.97438 * 10 9 7 24 24 H 1.09002 * 117.51408 * 145.10348 * 15 13 11 25 25 H 1.08998 * 117.51142 * 0.04328 * 15 13 11 26 26 H 1.09000 * 113.64538 * 309.38960 * 17 16 15 27 27 H 1.09011 * 113.64293 * 80.38953 * 17 16 15 28 28 H 1.08996 * 113.59311 * 270.39425 * 18 17 16 29 29 H 1.09000 * 113.66024 * 139.57840 * 18 17 16 30 30 H 1.08999 * 113.65298 * 279.60951 * 19 16 15 31 31 H 1.09002 * 113.64586 * 50.53183 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7333 -6.0287 0.0022 14 1 3.6556 -5.8591 0.5579 15 6 2.8174 -6.8883 -1.2623 16 6 2.1626 -7.4439 -0.0025 17 6 2.5872 -8.6492 0.8434 18 6 1.1932 -8.5792 1.4914 19 6 0.7107 -7.8895 0.2030 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1569 -3.4353 0.0021 24 1 3.7949 -7.2840 -1.5381 25 1 2.1648 -6.6247 -2.0946 26 1 2.7536 -9.5553 0.2608 27 1 3.4020 -8.4330 1.5345 28 1 1.1529 -7.9371 2.3712 29 1 0.7394 -9.5559 1.6595 30 1 0.0210 -7.0644 0.3808 31 1 0.3543 -8.5831 -0.5586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306389574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:05 Heat of formation + Delta-G solvation = -0.830555 kcal Electronic energy + Delta-G solvation = -13379.247268 eV Core-core repulsion = 11047.802621 eV Total energy + Delta-G solvation = -2331.444646 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90968 -37.75138 -34.13703 -33.42365 -32.24054 -27.49355 -25.51172 -24.21175 -22.58971 -21.94829 -19.68207 -18.29464 -16.96340 -15.82203 -15.29837 -15.08268 -14.79168 -14.36198 -13.98839 -13.37893 -12.53364 -12.21431 -12.02048 -11.81388 -11.72167 -11.41073 -11.18083 -10.96673 -10.85584 -10.32379 -10.12820 -9.86375 -9.64302 -9.39805 -8.79776 -8.71783 -7.85122 -6.15724 -4.22704 3.15288 3.25976 3.30597 3.32202 3.90719 4.13022 4.35217 4.69789 4.77695 4.92112 5.05725 5.07699 5.20284 5.50707 5.60986 5.69505 5.82548 5.83695 5.87072 5.96176 6.16695 6.41145 6.49155 6.66241 7.32527 7.48431 7.53039 7.68743 7.98351 8.66436 8.80045 9.15194 9.44154 10.94513 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.071159 B = 0.006019 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.392266 B = 4650.928751 C = 4828.030116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.709 5.709 11 C 0.527 3.473 12 O -0.552 6.552 13 C -0.159 4.159 14 H 0.118 0.882 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.138 4.138 19 C -0.108 4.108 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.391 0.609 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -13.713 0.337 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.357 5.357 11 C 0.312 3.688 12 O -0.431 6.431 13 C -0.180 4.180 14 H 0.136 0.864 15 C -0.180 4.180 16 C -0.128 4.128 17 C -0.137 4.137 18 C -0.175 4.175 19 C -0.145 4.145 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.223 0.777 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.627 -13.691 0.343 14.807 hybrid contribution 1.041 1.167 -0.011 1.564 sum 6.669 -12.524 0.333 14.193 Atomic orbital electron populations 1.69966 1.06121 1.27408 1.48862 1.24953 0.94914 0.99444 0.94685 0.86468 0.79411 0.82290 0.78693 1.20062 1.21052 1.20062 1.21200 0.93246 0.90491 1.53287 0.91948 1.19100 0.88321 0.81957 0.97687 1.46430 1.11129 1.05984 1.72116 1.19545 0.88428 0.83588 0.77264 1.90577 1.16691 1.84573 1.51282 1.22187 1.00815 0.90904 1.04083 0.86435 1.22800 1.02222 1.01693 0.91281 1.22082 0.98132 0.92794 0.99780 1.22508 0.97524 0.96060 0.97588 1.22736 0.96370 1.00427 0.97972 1.22612 0.94972 1.00561 0.96364 0.92392 0.95576 0.95560 0.77684 0.88226 0.88308 0.89778 0.91663 0.90259 0.91710 0.88250 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.75 5.43 -5.19 -0.03 6.73 16 10 N -0.71 -15.42 5.55 -61.47 -0.34 -15.76 16 11 C 0.53 10.90 7.61 -10.99 -0.08 10.82 16 12 O -0.55 -13.34 14.10 5.55 0.08 -13.26 16 13 C -0.16 -2.45 6.20 -91.92 -0.57 -3.02 16 14 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16 15 C -0.14 -1.90 10.23 -26.94 -0.28 -2.18 16 16 C -0.13 -1.78 2.88 -154.73 -0.45 -2.23 16 17 C -0.10 -1.11 8.10 -26.14 -0.21 -1.32 16 18 C -0.14 -1.67 8.08 -25.81 -0.21 -1.88 16 19 C -0.11 -1.58 7.63 -26.13 -0.20 -1.78 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.39 7.34 8.32 -40.82 -0.34 7.00 16 24 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.80 5.83 -51.93 -0.30 1.50 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -31.30 266.17 -7.38 -38.68 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.40 Total: 4.45 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.44 Total: -8.46 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.40 Total: -41.38 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.30 -7.38 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.848 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds