Wall clock time and date at job start Sun Mar 29 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47362 * 239.99918 * 3 2 1 5 5 H 1.48504 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47457 * 119.99508 * 3 2 1 7 7 C 1.37882 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99584 * 0.02562 * 7 2 1 10 10 N 1.46511 * 109.46794 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99734 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99677 * 179.97438 * 11 10 9 14 14 H 1.09004 * 115.58042 * 34.37614 * 13 11 10 15 15 C 1.53124 * 117.51296 * 248.60633 * 13 11 10 16 16 C 1.52463 * 59.91303 * 252.57250 * 15 13 11 17 17 C 1.53253 * 128.58661 * 242.37621 * 16 15 13 18 18 C 1.53884 * 86.88536 * 194.88792 * 17 16 15 19 19 C 1.53255 * 128.58200 * 117.57682 * 16 15 13 20 20 H 0.96998 * 119.99907 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47357 * 60.00256 * 9 7 2 22 22 H 1.09000 * 109.47167 * 299.99741 * 9 7 2 23 23 H 0.96999 * 119.99487 * 359.97438 * 10 9 7 24 24 H 1.09002 * 117.51408 * 145.10348 * 15 13 11 25 25 H 1.08998 * 117.51142 * 0.04328 * 15 13 11 26 26 H 1.09000 * 113.64538 * 309.38960 * 17 16 15 27 27 H 1.09011 * 113.64293 * 80.38953 * 17 16 15 28 28 H 1.08996 * 113.59311 * 270.39425 * 18 17 16 29 29 H 1.09000 * 113.66024 * 139.57840 * 18 17 16 30 30 H 1.08999 * 113.65298 * 279.60951 * 19 16 15 31 31 H 1.09002 * 113.64586 * 50.53183 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7333 -6.0287 0.0022 14 1 3.6556 -5.8591 0.5579 15 6 2.8174 -6.8883 -1.2623 16 6 2.1626 -7.4439 -0.0025 17 6 2.5872 -8.6492 0.8434 18 6 1.1932 -8.5792 1.4914 19 6 0.7107 -7.8895 0.2030 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.1569 -3.4353 0.0021 24 1 3.7949 -7.2840 -1.5381 25 1 2.1648 -6.6247 -2.0946 26 1 2.7536 -9.5553 0.2608 27 1 3.4020 -8.4330 1.5345 28 1 1.1529 -7.9371 2.3712 29 1 0.7394 -9.5559 1.6595 30 1 0.0210 -7.0644 0.3808 31 1 0.3543 -8.5831 -0.5586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306389574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:05 Heat of formation + Delta-G solvation = -21.933234 kcal Electronic energy + Delta-G solvation = -13380.162348 eV Core-core repulsion = 11047.802621 eV Total energy + Delta-G solvation = -2332.359727 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25802 -39.23058 -36.13013 -34.66000 -34.22300 -29.55512 -26.52033 -25.90433 -23.85367 -23.50755 -21.35268 -19.59134 -18.65465 -17.60800 -17.01314 -16.27080 -16.14570 -16.04889 -15.64770 -14.98077 -14.14953 -14.00155 -13.68549 -13.25446 -12.94782 -12.88429 -12.69267 -12.41791 -12.29198 -12.18413 -11.53742 -11.27053 -10.97263 -10.81258 -10.76058 -10.36854 -9.84281 -8.31087 -6.48491 1.41895 1.46402 1.54742 1.61127 2.29077 2.50733 2.86244 3.03652 3.54272 3.67555 3.87133 3.94321 4.01439 4.21889 4.52089 4.66526 4.82908 4.87032 4.91730 5.02214 5.09366 5.13406 5.20085 5.31554 5.42629 5.49554 5.56911 5.70080 5.82781 6.62322 6.90616 7.21195 7.49211 8.81114 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.071159 B = 0.006019 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.392266 B = 4650.928751 C = 4828.030116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.706 5.706 11 C 0.519 3.481 12 O -0.595 6.595 13 C -0.171 4.171 14 H 0.150 0.850 15 C -0.124 4.124 16 C -0.135 4.135 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.124 4.124 20 H 0.269 0.731 21 H -0.014 1.014 22 H -0.015 1.015 23 H 0.408 0.592 24 H 0.140 0.860 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 -14.657 0.314 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.355 5.355 11 C 0.307 3.693 12 O -0.477 6.477 13 C -0.191 4.191 14 H 0.167 0.833 15 C -0.161 4.161 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.172 4.172 19 C -0.161 4.161 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.243 0.757 24 H 0.158 0.842 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.734 -14.668 0.321 17.074 hybrid contribution -0.024 1.399 -0.018 1.399 sum 8.709 -13.269 0.302 15.875 Atomic orbital electron populations 1.70137 1.08358 1.28711 1.49840 1.26104 0.95792 1.04016 0.93698 0.85172 0.77892 0.76380 0.79549 1.18583 1.20971 1.18592 1.21593 0.94311 0.90571 1.53181 0.89816 1.18530 0.88702 0.84428 0.93891 1.46196 1.11160 1.05453 1.72659 1.20591 0.88979 0.84347 0.75381 1.90574 1.19182 1.85238 1.52731 1.22146 1.00604 0.89283 1.07102 0.83290 1.22935 1.03693 0.99634 0.89863 1.22340 0.97966 0.92665 1.00616 1.22495 0.96869 0.95230 0.96912 1.22721 0.97543 1.00845 0.96133 1.22683 0.94832 0.99892 0.98689 0.92185 0.99655 0.99657 0.75663 0.84195 0.90065 0.87075 0.90102 0.91723 0.89478 0.92871 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 42.77 29.54 68.60 2.03 44.79 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -31.15 9.28 25.60 0.24 -30.91 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.21 5.43 85.63 0.46 15.68 16 10 N -0.71 -31.46 5.55 -466.77 -2.59 -34.05 16 11 C 0.52 22.09 7.61 87.66 0.67 22.76 16 12 O -0.60 -30.65 14.10 -3.04 -0.04 -30.70 16 13 C -0.17 -5.00 6.20 -11.63 -0.07 -5.07 16 14 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 15 C -0.12 -2.98 10.23 30.46 0.31 -2.67 16 16 C -0.14 -3.51 2.88 -52.33 -0.15 -3.66 16 17 C -0.08 -1.43 8.10 30.98 0.25 -1.18 16 18 C -0.14 -3.03 8.08 31.19 0.25 -2.78 16 19 C -0.12 -3.59 7.63 30.98 0.24 -3.35 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 21 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 22 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H 0.41 15.10 8.32 -92.71 -0.77 14.33 16 24 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 2.05 5.83 -2.39 -0.01 2.03 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -72.15 266.17 2.69 -69.47 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.35 Total: 17.95 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 2.66 Total: -10.53 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.30 Total: -90.97 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.70 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.15 2.69 -69.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306389574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.532 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds