Wall clock time and date at job start Sun Mar 29 2020 21:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47426 * 2 1 4 4 N 1.40077 * 126.12354 * 270.26787 * 3 2 1 5 5 C 1.30988 * 108.48908 * 180.19514 * 4 3 2 6 6 C 1.39472 * 108.53926 * 359.57924 * 5 4 3 7 7 C 1.36061 * 126.11503 * 90.00238 * 3 2 1 8 8 N 1.38590 * 126.31933 * 359.97438 * 7 3 2 9 9 C 1.34772 * 120.00357 * 179.97438 * 8 7 3 10 10 O 1.21818 * 119.99619 * 359.97438 * 9 8 7 11 11 C 1.41528 * 120.00068 * 180.02562 * 9 8 7 12 12 H 1.07998 * 119.99967 * 359.97438 * 11 9 8 13 13 C 1.40163 * 120.00117 * 179.97438 * 11 9 8 14 14 N 1.30623 * 119.99669 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00310 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47158 * 89.99777 * 15 13 11 17 17 H 1.48498 * 109.47245 * 210.00251 * 15 13 11 18 18 H 1.48500 * 109.46836 * 330.00016 * 15 13 11 19 19 H 1.09000 * 109.46729 * 300.00192 * 1 2 3 20 20 H 1.09000 * 109.46836 * 59.99654 * 1 2 3 21 21 H 1.08991 * 109.47473 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46836 * 240.00337 * 2 1 3 23 23 H 1.09000 * 109.46836 * 120.00346 * 2 1 3 24 24 H 1.08002 * 125.73281 * 179.85216 * 5 4 3 25 25 H 1.07997 * 126.07575 * 180.28722 * 6 5 4 26 26 H 0.97001 * 119.99394 * 359.97165 * 8 7 3 27 27 H 0.97006 * 119.99778 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2887 2.1615 -1.1315 5 6 2.7106 3.3363 -0.7347 6 6 2.7177 3.3572 0.6599 7 6 2.2858 2.1372 1.0991 8 7 2.1459 1.7430 2.4204 9 6 2.4497 2.6001 3.4152 10 8 2.8476 3.7212 3.1529 11 6 2.3073 2.1973 4.7644 12 1 1.9549 1.2033 4.9969 13 6 2.6237 3.0885 5.7990 14 7 3.0495 4.2909 5.5177 15 14 2.4352 2.5571 7.5798 16 1 3.7046 1.9480 8.0517 17 1 2.1122 3.7398 8.4177 18 1 1.3388 1.5612 7.6858 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.9999 4.1533 -1.3791 25 1 3.0118 4.1896 1.2819 26 1 1.8294 0.8502 2.6292 27 1 3.2688 4.9076 6.2337 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306394135.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:38 Heat of formation + Delta-G solvation = 15.810478 kcal Electronic energy + Delta-G solvation = -13496.076118 eV Core-core repulsion = 11061.812737 eV Total energy + Delta-G solvation = -2434.263380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.08114 -39.51328 -35.67076 -35.13522 -34.37343 -30.51395 -30.04670 -28.25993 -24.68847 -23.41546 -21.88456 -20.68919 -19.42702 -18.24765 -17.50540 -16.39621 -16.12316 -15.78514 -15.17447 -14.88843 -14.67332 -14.30046 -13.73849 -13.34826 -13.26307 -12.91843 -12.80968 -12.72652 -12.21758 -12.03315 -11.57585 -11.49433 -10.94424 -9.86630 -9.75586 -8.76617 -8.41637 -7.06215 1.00226 1.40160 1.43694 1.49927 1.60447 2.02849 2.22287 2.45527 2.84320 3.60886 3.66049 4.11421 4.20427 4.31468 4.51686 4.74905 4.85983 4.96297 5.17550 5.18983 5.37645 5.50738 5.79877 6.00273 6.06503 6.41768 6.70509 6.85179 7.33293 8.32211 8.52088 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.047835 B = 0.008718 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.205959 B = 3210.869879 C = 3712.754171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 N -0.399 5.399 4 N -0.330 5.330 5 C 0.062 3.938 6 C -0.342 4.342 7 C 0.328 3.672 8 N -0.661 5.661 9 C 0.531 3.469 10 O -0.597 6.597 11 C -0.557 4.557 12 H 0.097 0.903 13 C 0.033 3.967 14 N -0.798 5.798 15 Si 1.005 2.995 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.246 1.246 19 H 0.043 0.957 20 H 0.053 0.947 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.100 0.900 24 H 0.208 0.792 25 H 0.137 0.863 26 H 0.406 0.594 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -9.320 -3.847 10.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.000 4.000 3 N -0.190 5.190 4 N -0.152 5.152 5 C -0.123 4.123 6 C -0.375 4.375 7 C 0.105 3.895 8 N -0.309 5.309 9 C 0.341 3.659 10 O -0.482 6.482 11 C -0.592 4.592 12 H 0.115 0.885 13 C -0.186 4.186 14 N -0.426 5.426 15 Si 0.824 3.176 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.169 1.169 19 H 0.063 0.937 20 H 0.072 0.928 21 H 0.128 0.872 22 H 0.129 0.871 23 H 0.118 0.882 24 H 0.225 0.775 25 H 0.154 0.846 26 H 0.242 0.758 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.822 -9.234 -4.899 11.130 hybrid contribution 0.098 0.311 1.426 1.463 sum -3.725 -8.923 -3.474 10.274 Atomic orbital electron populations 1.22155 0.93584 1.04402 1.01842 1.21929 0.95934 0.76711 1.05426 1.49104 1.55632 1.12901 1.01329 1.77173 1.26400 1.04950 1.06701 1.23990 0.97809 0.96233 0.94287 1.21650 1.20949 0.99400 0.95458 1.18637 0.96841 0.91977 0.82014 1.43285 1.68428 1.18330 1.00878 1.17423 0.78962 0.84016 0.85535 1.90581 1.51971 1.22187 1.83450 1.20458 1.46841 1.02497 0.89440 0.88540 1.27047 0.91261 0.93614 1.06709 1.70150 1.29530 1.06538 1.36346 0.84898 0.80121 0.78891 0.73730 1.18454 1.19716 1.16875 0.93749 0.92815 0.87245 0.87106 0.88204 0.77507 0.84586 0.75839 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.85 15 2 C 0.12 3.06 6.99 86.38 0.60 3.66 15 3 N -0.40 -14.85 3.65 -344.65 -1.26 -16.11 15 4 N -0.33 -12.75 12.57 -57.20 -0.72 -13.47 15 5 C 0.06 2.43 11.99 85.12 1.02 3.45 15 6 C -0.34 -16.50 9.65 22.20 0.21 -16.29 15 7 C 0.33 14.85 7.68 131.49 1.01 15.86 15 8 N -0.66 -30.24 5.37 -316.34 -1.70 -31.94 15 9 C 0.53 29.90 7.52 85.05 0.64 30.54 15 10 O -0.60 -38.60 11.98 -4.73 -0.06 -38.65 15 11 C -0.56 -29.56 9.30 23.55 0.22 -29.35 15 12 H 0.10 4.44 7.85 -2.91 -0.02 4.42 15 13 C 0.03 1.70 5.50 85.34 0.47 2.17 15 14 N -0.80 -46.15 11.73 21.86 0.26 -45.89 15 15 Si 1.01 37.77 29.56 68.60 2.03 39.80 15 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 18 H -0.25 -8.48 7.11 99.48 0.71 -7.77 15 19 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.10 2.19 7.53 -2.39 -0.02 2.17 15 24 H 0.21 6.30 8.06 -2.91 -0.02 6.28 15 25 H 0.14 7.63 5.82 -2.91 -0.02 7.61 15 26 H 0.41 15.12 7.95 -92.71 -0.74 14.38 15 27 H 0.28 14.62 8.29 -92.70 -0.77 13.85 15 Total: -1.00 -73.57 243.10 3.92 -69.65 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.46 Total: 29.42 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.91 Total: 7.20 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.42 Total: -107.41 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.06 Total: -38.65 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -73.57 3.92 -69.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306394135.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.457 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds