Wall clock time and date at job start Sun Mar 29 2020 21:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.50696 * 109.46996 * 240.00332 * 2 1 3 5 5 H 1.08000 * 119.99925 * 239.99847 * 4 2 1 6 6 C 1.37873 * 120.00616 * 59.99875 * 4 2 1 7 7 N 1.31521 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00491 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46983 * 59.99694 * 8 6 4 10 10 H 1.48498 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47313 * 300.00006 * 8 6 4 12 12 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 13 13 C 1.34784 * 119.99971 * 275.00026 * 12 2 1 14 14 O 1.21605 * 119.99806 * 359.72704 * 13 12 2 15 15 C 1.47099 * 119.99647 * 179.97438 * 13 12 2 16 16 C 1.32994 * 119.99461 * 179.97438 * 15 13 12 17 17 C 1.51401 * 136.32112 * 359.63345 * 16 15 13 18 18 C 1.53378 * 87.52180 * 206.05636 * 17 16 15 19 19 C 1.51408 * 136.31089 * 180.02562 * 16 15 13 20 20 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 22 22 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 23 23 H 0.97001 * 119.99446 * 180.02562 * 7 6 4 24 24 H 0.96999 * 119.99984 * 94.99874 * 12 2 1 25 25 H 1.07999 * 120.00303 * 359.97438 * 15 13 12 26 26 H 1.09003 * 113.56088 * 320.63439 * 17 16 15 27 27 H 1.09000 * 113.56284 * 91.37100 * 17 16 15 28 28 H 1.08997 * 113.97111 * 220.29511 * 18 17 16 29 29 H 1.08999 * 113.60039 * 88.78655 * 18 17 16 30 30 H 1.09007 * 113.55899 * 268.62479 * 19 16 15 31 31 H 1.08991 * 113.56443 * 39.36179 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8626 1.1629 2.4105 15 6 2.6370 -0.7118 3.5583 16 6 2.7645 -0.0481 4.7038 17 6 2.5315 1.3703 5.1792 18 6 3.5883 1.1107 6.2601 19 6 3.2141 -0.3723 6.1127 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7089 1.1615 -3.4844 24 1 2.2491 -1.6317 1.1526 25 1 2.8930 -1.7599 3.5100 26 1 2.8295 2.1274 4.4539 27 1 1.5313 1.5372 5.5789 28 1 3.3392 1.5332 7.2335 29 1 4.6046 1.3418 5.9412 30 1 2.4011 -0.6838 6.7687 31 1 4.0715 -1.0440 6.1528 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306434083.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:13 Heat of formation + Delta-G solvation = -27.559844 kcal Electronic energy + Delta-G solvation = -13368.129984 eV Core-core repulsion = 11035.526269 eV Total energy + Delta-G solvation = -2332.603715 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68769 -39.19132 -36.65151 -34.30498 -32.14819 -30.32944 -27.35807 -26.63434 -24.67947 -22.74994 -21.27470 -19.59743 -18.35124 -17.53475 -17.12928 -16.38000 -16.18865 -15.58199 -15.27297 -14.88903 -14.36539 -13.72548 -13.30551 -13.06711 -12.88946 -12.82807 -12.74273 -12.58509 -12.28179 -12.15451 -11.85840 -11.39531 -11.13360 -10.64384 -10.49927 -10.17525 -9.64832 -8.18157 -6.36341 0.48726 1.44481 1.47251 1.55170 2.35714 2.48822 2.65636 3.11930 3.54852 3.64460 3.87547 4.27533 4.32921 4.65569 4.72372 4.77321 4.88012 4.90252 4.98510 5.06643 5.07842 5.28742 5.39768 5.43418 5.60348 5.67622 5.74209 5.94618 6.08783 6.71409 7.02245 7.31692 7.59564 8.88315 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.069168 B = 0.006232 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.715638 B = 4491.990712 C = 4652.400282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.703 5.703 13 C 0.526 3.474 14 O -0.605 6.605 15 C -0.206 4.206 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.088 4.088 20 H 0.041 0.959 21 H 0.009 0.991 22 H 0.067 0.933 23 H 0.266 0.734 24 H 0.405 0.595 25 H 0.161 0.839 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -5.762 14.646 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.351 5.351 13 C 0.316 3.684 14 O -0.489 6.489 15 C -0.227 4.227 16 C -0.081 4.081 17 C -0.160 4.160 18 C -0.166 4.166 19 C -0.124 4.124 20 H 0.060 0.940 21 H 0.029 0.971 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.240 0.760 25 H 0.179 0.821 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.259 -4.827 14.507 15.872 hybrid contribution 0.076 -0.290 -1.320 1.354 sum 4.335 -5.118 13.187 14.795 Atomic orbital electron populations 1.21886 0.98314 0.99434 0.99444 1.18338 0.91154 0.91850 0.82101 0.98683 1.21522 1.32738 1.13632 0.90821 0.90855 1.25854 0.94818 0.95594 1.02449 1.70062 1.36984 1.23964 1.24718 0.85335 0.78606 0.78693 0.77314 1.18741 1.21052 1.19571 1.46198 1.65082 1.14171 1.09666 1.19275 0.77809 0.86565 0.84771 1.90682 1.53907 1.18055 1.86272 1.21756 1.08633 1.01139 0.91152 1.23957 0.90827 0.97736 0.95575 1.22351 1.00879 0.94415 0.98364 1.22704 0.98415 0.96260 0.99229 1.22360 1.02395 0.97736 0.89937 0.94034 0.97146 0.91431 0.92500 0.75988 0.82109 0.93160 0.88266 0.88096 0.89834 0.86108 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.70 2.56 44.24 0.11 14.81 16 3 H 0.00 -0.31 7.57 -2.38 -0.02 -0.32 16 4 C -0.55 -30.05 8.73 25.60 0.22 -29.82 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 N -0.70 -31.32 5.07 -449.71 -2.28 -33.60 16 13 C 0.53 22.92 7.73 86.57 0.67 23.59 16 14 O -0.60 -31.67 14.81 -4.05 -0.06 -31.73 16 15 C -0.21 -6.46 10.03 23.43 0.23 -6.22 16 16 C -0.08 -2.16 6.93 -17.17 -0.12 -2.27 16 17 C -0.12 -3.38 6.99 30.06 0.21 -3.17 16 18 C -0.13 -2.31 8.17 30.94 0.25 -2.06 16 19 C -0.09 -1.46 7.95 30.16 0.24 -1.22 16 20 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 21 H 0.01 0.50 8.14 -2.38 -0.02 0.49 16 22 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 23 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.41 15.09 8.52 -92.71 -0.79 14.30 16 25 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.05 1.74 7.49 -2.39 -0.02 1.72 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.17 266.45 3.20 -66.97 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.33 Total: 19.00 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 2.94 Total: -11.57 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.04 Total: -87.38 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.06 Total: -31.73 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.17 3.20 -66.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306434083.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.412 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds