Wall clock time and date at job start Sun Mar 29 2020 21:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47681 * 2 1 4 4 C 1.50700 * 109.47381 * 120.00470 * 2 1 3 5 5 H 1.08000 * 119.99887 * 119.99528 * 4 2 1 6 6 C 1.37878 * 119.99712 * 299.99986 * 4 2 1 7 7 N 1.31518 * 119.99662 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00283 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46901 * 90.00233 * 8 6 4 10 10 H 1.48498 * 109.47301 * 210.00332 * 8 6 4 11 11 H 1.48500 * 109.46933 * 330.00884 * 8 6 4 12 12 N 1.46507 * 109.46685 * 240.00139 * 2 1 3 13 13 C 1.34777 * 119.99904 * 85.00297 * 12 2 1 14 14 O 1.21616 * 119.99664 * 359.97438 * 13 12 2 15 15 C 1.47099 * 119.99847 * 179.97438 * 13 12 2 16 16 C 1.32995 * 119.99959 * 179.97438 * 15 13 12 17 17 C 1.51406 * 136.31319 * 359.63100 * 16 15 13 18 18 C 1.53676 * 87.40846 * 206.25686 * 17 16 15 19 19 C 1.51406 * 136.31963 * 179.97438 * 16 15 13 20 20 H 1.08997 * 109.47324 * 59.99236 * 1 2 3 21 21 H 1.08995 * 109.47681 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46886 * 299.99670 * 1 2 3 23 23 H 0.96997 * 119.99708 * 179.97438 * 7 6 4 24 24 H 0.96993 * 119.99875 * 264.99773 * 12 2 1 25 25 H 1.07993 * 120.00116 * 359.97438 * 15 13 12 26 26 H 1.08997 * 113.56190 * 320.89508 * 17 16 15 27 27 H 1.09006 * 113.55926 * 91.62978 * 17 16 15 28 28 H 1.08998 * 113.82729 * 220.14404 * 18 17 16 29 29 H 1.09007 * 113.82260 * 88.57249 * 18 17 16 30 30 H 1.09004 * 113.56168 * 268.37300 * 19 16 15 31 31 H 1.09003 * 113.55389 * 39.10428 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8593 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6995 10 1 0.9773 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.8573 1.1617 -2.4118 15 6 2.6377 -0.7115 -3.5582 16 6 2.7642 -0.0481 -4.7039 17 6 2.5167 1.3666 -5.1830 18 6 2.3171 0.7810 -6.5897 19 6 3.2142 -0.3721 -6.1128 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.9041 -0.5277 4.4374 24 1 2.2489 -1.6317 -1.1527 25 1 2.8952 -1.7592 -3.5095 26 1 1.6155 1.8163 -4.7663 27 1 3.3900 2.0137 -5.1004 28 1 2.7586 1.3828 -7.3840 29 1 1.2902 0.4820 -6.8005 30 1 4.2766 -0.1962 -6.2822 31 1 2.8865 -1.3518 -6.4603 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306434084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:15 Heat of formation + Delta-G solvation = 1.254969 kcal Electronic energy + Delta-G solvation = -13433.954772 eV Core-core repulsion = 11102.600561 eV Total energy + Delta-G solvation = -2331.354211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33530 -38.03309 -34.89688 -32.35232 -30.96692 -29.30033 -25.72799 -25.16770 -23.47913 -21.25855 -19.65308 -18.21527 -16.97952 -15.91551 -15.66440 -15.45638 -14.73791 -14.00391 -13.88949 -13.14732 -12.87987 -12.45241 -12.17172 -12.08181 -11.68144 -11.61223 -11.23977 -10.97097 -10.78681 -10.41233 -10.15660 -9.65697 -9.19812 -9.02540 -8.99201 -8.72279 -8.04891 -6.18346 -4.20433 1.67083 3.25511 3.37273 3.42634 3.90443 3.95209 4.34346 4.50505 4.65993 4.81398 5.08345 5.16724 5.46087 5.54004 5.62709 5.70382 5.80036 6.09241 6.21478 6.33006 6.37479 6.45281 6.60459 6.77320 6.91918 7.26282 7.36287 7.57063 8.22104 8.60462 8.79807 9.04161 9.43149 10.93963 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066934 B = 0.006838 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.224924 B = 4093.713568 C = 4320.558587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.559 6.559 15 C -0.185 4.185 16 C -0.080 4.080 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.107 4.107 20 H 0.035 0.965 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.267 0.733 24 H 0.395 0.605 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 0.271 -16.434 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.440 6.440 15 C -0.206 4.206 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.180 4.180 19 C -0.144 4.144 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.229 0.771 25 H 0.146 0.854 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.165 1.101 -16.221 16.259 hybrid contribution -0.482 0.093 0.394 0.629 sum -0.316 1.194 -15.827 15.875 Atomic orbital electron populations 1.22441 0.99361 1.00805 0.99233 1.19088 0.90098 0.94706 0.82879 0.93393 1.21063 1.33146 1.14385 0.88583 0.90207 1.24837 0.95522 0.96719 0.95520 1.69874 1.45014 1.40171 0.98022 0.86865 0.80507 0.83646 0.77400 1.20325 1.22174 1.18658 1.46101 1.64890 1.13772 1.09748 1.18407 0.78630 0.86846 0.83691 1.90710 1.51960 1.15914 1.85423 1.21821 1.06442 1.00413 0.91893 1.23317 0.93761 0.97972 0.93193 1.22208 1.03322 0.94480 0.93979 1.22775 1.00115 0.97910 0.97222 1.22303 1.00345 0.99516 0.92189 0.94573 0.92854 0.93517 0.92324 0.77135 0.85351 0.89603 0.88785 0.90770 0.89910 0.88505 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.96 37.16 0.33 -3.37 16 2 C 0.24 5.82 2.15 -69.08 -0.15 5.67 16 3 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 4 C -0.53 -14.75 9.31 -34.44 -0.32 -15.07 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 8 Si 0.89 22.16 24.37 -169.99 -4.14 18.02 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.53 6.53 56.52 0.37 -6.17 16 12 N -0.70 -14.54 5.07 -56.12 -0.28 -14.82 16 13 C 0.54 10.77 7.73 -12.67 -0.10 10.67 16 14 O -0.56 -13.00 14.81 5.26 0.08 -12.93 16 15 C -0.18 -2.84 10.03 -37.81 -0.38 -3.22 16 16 C -0.08 -1.11 6.92 -100.48 -0.70 -1.80 16 17 C -0.10 -1.36 7.01 -27.40 -0.19 -1.55 16 18 C -0.14 -1.40 8.18 -26.03 -0.21 -1.61 16 19 C -0.11 -1.05 7.95 -27.40 -0.22 -1.27 16 20 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 24 H 0.40 7.22 8.52 -40.82 -0.35 6.87 16 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.09 1.32 7.48 -51.93 -0.39 0.93 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -31.80 259.65 -5.92 -37.72 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.23 Total: 3.59 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.03 Total: -9.45 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.49 Total: -40.87 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.80 -5.92 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306434084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds