Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47681 * 2 1 4 4 C 1.50700 * 109.47381 * 120.00470 * 2 1 3 5 5 H 1.08000 * 119.99887 * 119.99528 * 4 2 1 6 6 C 1.37878 * 119.99712 * 299.99986 * 4 2 1 7 7 N 1.31518 * 119.99662 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00283 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46901 * 90.00233 * 8 6 4 10 10 H 1.48498 * 109.47301 * 210.00332 * 8 6 4 11 11 H 1.48500 * 109.46933 * 330.00884 * 8 6 4 12 12 N 1.46507 * 109.46685 * 240.00139 * 2 1 3 13 13 C 1.34777 * 119.99904 * 85.00297 * 12 2 1 14 14 O 1.21616 * 119.99664 * 359.97438 * 13 12 2 15 15 C 1.47099 * 119.99847 * 179.97438 * 13 12 2 16 16 C 1.32995 * 119.99959 * 179.97438 * 15 13 12 17 17 C 1.51406 * 136.31319 * 359.63100 * 16 15 13 18 18 C 1.53676 * 87.40846 * 206.25686 * 17 16 15 19 19 C 1.51406 * 136.31963 * 179.97438 * 16 15 13 20 20 H 1.08997 * 109.47324 * 59.99236 * 1 2 3 21 21 H 1.08995 * 109.47681 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46886 * 299.99670 * 1 2 3 23 23 H 0.96997 * 119.99708 * 179.97438 * 7 6 4 24 24 H 0.96993 * 119.99875 * 264.99773 * 12 2 1 25 25 H 1.07993 * 120.00116 * 359.97438 * 15 13 12 26 26 H 1.08997 * 113.56190 * 320.89508 * 17 16 15 27 27 H 1.09006 * 113.55926 * 91.62978 * 17 16 15 28 28 H 1.08998 * 113.82729 * 220.14404 * 18 17 16 29 29 H 1.09007 * 113.82260 * 88.57249 * 18 17 16 30 30 H 1.09004 * 113.56168 * 268.37300 * 19 16 15 31 31 H 1.09003 * 113.55389 * 39.10428 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8593 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6995 10 1 0.9773 1.9951 3.9071 11 1 0.8490 2.1771 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.8573 1.1617 -2.4118 15 6 2.6377 -0.7115 -3.5582 16 6 2.7642 -0.0481 -4.7039 17 6 2.5167 1.3666 -5.1830 18 6 2.3171 0.7810 -6.5897 19 6 3.2142 -0.3721 -6.1128 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.9041 -0.5277 4.4374 24 1 2.2489 -1.6317 -1.1527 25 1 2.8952 -1.7592 -3.5095 26 1 1.6155 1.8163 -4.7663 27 1 3.3900 2.0137 -5.1004 28 1 2.7586 1.3828 -7.3840 29 1 1.2902 0.4820 -6.8005 30 1 4.2766 -0.1962 -6.2822 31 1 2.8865 -1.3518 -6.4603 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306434084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = -21.014768 kcal Electronic energy + Delta-G solvation = -13434.920460 eV Core-core repulsion = 11102.600561 eV Total energy + Delta-G solvation = -2332.319899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76069 -39.22157 -36.76998 -34.39499 -32.49309 -30.85281 -27.24838 -26.62836 -24.76494 -22.75593 -21.34651 -19.66499 -18.57998 -17.63928 -17.38108 -16.41235 -16.20582 -15.69984 -15.32851 -14.95090 -14.74836 -14.14503 -13.72736 -13.30120 -13.21449 -12.88184 -12.79047 -12.59266 -12.16194 -11.86319 -11.64795 -11.38704 -11.30221 -10.88506 -10.56706 -10.20830 -9.76101 -8.39708 -6.45622 0.45926 1.25770 1.33870 1.43955 2.24967 2.42161 2.49380 2.96480 3.50749 3.63610 3.85877 4.24410 4.30491 4.43849 4.55102 4.65368 4.68799 4.77580 4.87242 4.94644 4.99924 5.07144 5.26208 5.35987 5.39183 5.41848 5.65706 5.72450 6.15012 6.55787 6.92113 7.18144 7.48263 8.75689 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066934 B = 0.006838 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.224924 B = 4093.713568 C = 4320.558587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.020 0.980 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.258 1.258 10 H -0.290 1.290 11 H -0.265 1.265 12 N -0.699 5.699 13 C 0.532 3.468 14 O -0.599 6.599 15 C -0.208 4.208 16 C -0.076 4.076 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.091 4.091 20 H 0.043 0.957 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.271 0.729 24 H 0.407 0.593 25 H 0.159 0.841 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 0.085 -18.749 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.136 3.864 3 H 0.038 0.962 4 C -0.572 4.572 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.217 1.217 11 H -0.190 1.190 12 N -0.347 5.347 13 C 0.322 3.678 14 O -0.483 6.483 15 C -0.229 4.229 16 C -0.078 4.078 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.128 4.128 20 H 0.062 0.938 21 H 0.084 0.916 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.243 0.757 25 H 0.177 0.823 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.022 0.884 -18.558 18.579 hybrid contribution -0.355 0.174 1.030 1.104 sum -0.377 1.058 -17.528 17.563 Atomic orbital electron populations 1.22329 0.97833 1.01665 0.99332 1.18754 0.91228 0.93118 0.83316 0.96196 1.21262 1.32417 1.13614 0.89948 0.92519 1.25559 0.96832 0.99363 0.95294 1.69975 1.46642 1.41933 0.98654 0.85991 0.79841 0.80301 0.77174 1.18381 1.21704 1.18999 1.45952 1.65315 1.14316 1.09139 1.19187 0.77549 0.86509 0.84519 1.90683 1.53732 1.17764 1.86099 1.21707 1.09034 1.01829 0.90298 1.23952 0.90924 0.98421 0.94497 1.22407 1.02241 0.94492 0.96740 1.22760 1.00706 0.97591 0.95531 1.22380 1.01517 1.00613 0.88252 0.93797 0.91596 0.93997 0.91978 0.75735 0.82348 0.92643 0.88296 0.88260 0.89601 0.86311 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.96 8.96 71.98 0.65 -6.32 16 2 C 0.24 11.96 2.15 44.24 0.10 12.06 16 3 H 0.02 1.11 6.63 -2.39 -0.02 1.10 16 4 C -0.53 -29.98 9.31 25.60 0.24 -29.74 16 5 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.69 5.45 84.65 0.46 2.15 16 7 N -0.93 -56.70 13.96 21.45 0.30 -56.40 16 8 Si 0.94 45.69 24.37 68.60 1.67 47.36 16 9 H -0.26 -11.74 6.87 99.48 0.68 -11.06 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.27 -12.95 6.53 99.48 0.65 -12.30 16 12 N -0.70 -29.18 5.07 -449.70 -2.28 -31.46 16 13 C 0.53 21.32 7.73 86.57 0.67 21.99 16 14 O -0.60 -28.35 14.81 -4.08 -0.06 -28.41 16 15 C -0.21 -6.09 10.03 23.43 0.23 -5.85 16 16 C -0.08 -1.92 6.92 -17.17 -0.12 -2.04 16 17 C -0.12 -3.05 7.01 30.16 0.21 -2.84 16 18 C -0.13 -2.08 8.18 31.05 0.25 -1.82 16 19 C -0.09 -1.41 7.95 30.16 0.24 -1.17 16 20 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 22 H 0.04 1.92 3.27 -2.38 -0.01 1.91 16 23 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 24 H 0.41 14.82 8.52 -92.71 -0.79 14.03 16 25 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.05 1.72 7.48 -2.39 -0.02 1.70 16 27 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.52 259.65 2.82 -66.70 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.25 Total: 15.79 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 2.93 Total: -13.58 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.98 Total: -87.86 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -69.52 2.82 -66.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306434084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds