Wall clock time and date at job start Sun Mar 29 2020 21:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48510 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47315 * 299.99785 * 3 2 1 6 6 H 1.48491 * 109.47376 * 60.00061 * 3 2 1 7 7 C 1.40048 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00557 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99622 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00539 * 4.73991 * 9 7 2 11 11 N 1.34781 * 119.99923 * 185.01845 * 9 7 2 12 12 C 1.46836 * 120.38227 * 174.20729 * 11 9 7 13 13 C 1.53803 * 108.57153 * 123.09298 * 12 11 9 14 14 C 1.53181 * 108.71406 * 51.51532 * 13 12 11 15 15 C 1.52851 * 117.65783 * 89.90381 * 14 13 12 16 16 C 1.52816 * 117.71369 * 158.76001 * 14 13 12 17 17 C 1.53184 * 115.07470 * 304.42752 * 14 13 12 18 18 C 1.46846 * 120.37963 * 354.48379 * 11 9 7 19 19 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.57936 * 242.92151 * 12 11 9 21 21 H 1.09000 * 109.58038 * 3.32748 * 12 11 9 22 22 H 1.08999 * 109.71703 * 291.68299 * 13 12 11 23 23 H 1.09005 * 109.51075 * 171.21677 * 13 12 11 24 24 H 1.08998 * 117.50174 * 215.18196 * 15 14 13 25 25 H 1.08995 * 117.50297 * 0.23386 * 15 14 13 26 26 H 1.09001 * 117.50339 * 359.85877 * 16 14 13 27 27 H 1.09005 * 117.50084 * 144.87517 * 16 14 13 28 28 H 1.08991 * 109.59139 * 295.66147 * 17 14 13 29 29 H 1.09007 * 109.70366 * 175.29909 * 17 14 13 30 30 H 1.09004 * 109.57922 * 356.67890 * 18 11 9 31 31 H 1.08998 * 109.57797 * 116.93918 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0614 -2.4823 -0.0870 11 7 1.9450 -3.6455 0.1032 12 6 1.2151 -4.9131 0.2317 13 6 1.6483 -5.8458 -0.9120 14 6 3.1782 -5.9189 -0.9339 15 6 3.8486 -7.0072 -0.0957 16 6 3.8224 -7.1221 -1.6214 17 6 3.8911 -4.5678 -1.0468 18 6 3.4134 -3.6611 0.0938 19 1 -0.4850 0.8401 -0.0004 20 1 1.4497 -5.3740 1.1912 21 1 0.1433 -4.7257 0.1664 22 1 1.2874 -5.4538 -1.8629 23 1 1.2373 -6.8415 -0.7451 24 1 4.8016 -6.7648 0.3745 25 1 3.2013 -7.6766 0.4708 26 1 3.1579 -7.8673 -2.0587 27 1 4.7580 -6.9553 -2.1552 28 1 3.6512 -4.1070 -2.0049 29 1 4.9687 -4.7134 -0.9709 30 1 3.7885 -2.6495 -0.0620 31 1 3.7806 -4.0441 1.0459 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306437386.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:22 Heat of formation + Delta-G solvation = -17.265150 kcal Electronic energy + Delta-G solvation = -14026.976998 eV Core-core repulsion = 11694.819694 eV Total energy + Delta-G solvation = -2332.157304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.07816 -36.88391 -33.94535 -32.48791 -30.66933 -28.85620 -26.19637 -22.94136 -22.71732 -21.99449 -19.74260 -18.03318 -16.37142 -15.67558 -15.11641 -14.47097 -14.24631 -13.92659 -13.51440 -13.06675 -12.57024 -12.25058 -11.67290 -11.61090 -11.41470 -11.11993 -11.02147 -10.83733 -10.65041 -10.55748 -10.17020 -9.78836 -9.61322 -9.41907 -8.84372 -7.54248 -7.14023 -6.18014 -4.62549 3.13253 3.21448 3.25477 3.99219 4.10295 4.57963 4.62843 4.88864 5.08115 5.13653 5.31885 5.71201 5.75308 5.75917 5.83245 5.92940 5.99405 6.08948 6.26535 6.30934 6.31967 6.41614 6.55361 6.58256 6.69657 6.85713 7.47690 7.69492 8.17957 8.40148 9.04080 9.48109 10.60057 10.78938 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053795 B = 0.008756 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.368775 B = 3197.005623 C = 3552.619549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.559 3.441 10 O -0.580 6.580 11 N -0.641 5.641 12 C 0.124 3.876 13 C -0.095 4.095 14 C -0.110 4.110 15 C -0.176 4.176 16 C -0.183 4.183 17 C -0.098 4.098 18 C 0.126 3.874 19 H 0.267 0.733 20 H 0.041 0.959 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 -8.834 -0.998 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.364 3.636 10 O -0.462 6.462 11 N -0.379 5.379 12 C -0.001 4.001 13 C -0.133 4.133 14 C -0.110 4.110 15 C -0.213 4.213 16 C -0.220 4.220 17 C -0.136 4.136 18 C 0.001 3.999 19 H 0.078 0.922 20 H 0.060 0.940 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.361 -8.710 -1.038 11.451 hybrid contribution 0.613 0.627 -0.025 0.877 sum 7.974 -8.083 -1.063 11.404 Atomic orbital electron populations 1.70032 1.07072 1.27130 1.35520 1.25738 0.94602 1.00301 0.92600 0.86349 0.80518 0.81882 0.78218 1.18738 1.20173 1.20171 1.21035 0.93599 0.89307 1.54200 0.90844 1.18267 0.86917 0.82337 0.76037 1.90581 1.14423 1.86213 1.55024 1.48078 1.04667 1.05916 1.79190 1.21171 0.98490 0.85145 0.95272 1.21623 0.91913 0.99221 1.00556 1.21468 0.95265 0.90669 1.03630 1.22960 1.02294 1.02705 0.93344 1.22972 1.02526 1.01410 0.95093 1.21587 0.97843 0.93514 1.00667 1.21373 0.82618 1.00270 0.95644 0.92185 0.94039 0.89777 0.91488 0.92231 0.89191 0.89257 0.89325 0.89265 0.91356 0.92052 0.88853 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.84 55.55 0.66 -22.54 16 2 C 0.09 2.44 5.50 -17.36 -0.10 2.34 16 3 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -15.38 8.86 -35.63 -0.32 -15.70 16 8 H 0.07 1.89 5.64 -52.49 -0.30 1.59 16 9 C 0.56 16.15 7.61 -12.98 -0.10 16.05 16 10 O -0.58 -19.02 14.42 5.20 0.08 -18.94 16 11 N -0.64 -14.94 2.91 -174.09 -0.51 -15.45 16 12 C 0.12 2.51 6.47 -3.44 -0.02 2.49 16 13 C -0.09 -1.59 5.85 -26.22 -0.15 -1.74 16 14 C -0.11 -1.66 1.94 -154.49 -0.30 -1.96 16 15 C -0.18 -2.24 9.94 -26.79 -0.27 -2.51 16 16 C -0.18 -2.28 9.99 -26.81 -0.27 -2.55 16 17 C -0.10 -1.57 5.83 -26.46 -0.15 -1.72 16 18 C 0.13 2.40 6.33 -3.67 -0.02 2.38 16 19 H 0.27 7.29 8.29 -40.82 -0.34 6.96 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.08 1.91 6.96 -51.93 -0.36 1.55 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 24 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.83 8.11 -51.92 -0.42 0.41 16 30 H 0.09 1.87 5.29 -51.93 -0.27 1.59 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 255.89 15.07 3.86 3.86 Total: -1.00 -33.16 255.89 -6.93 -40.09 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.29 Total: 0.81 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.70 Total: -2.92 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.15 Total: -37.99 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.16 -6.93 -40.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306437386.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.827 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds