Wall clock time and date at job start Sun Mar 29 2020 21:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48510 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47315 * 299.99785 * 3 2 1 6 6 H 1.48491 * 109.47376 * 60.00061 * 3 2 1 7 7 C 1.40048 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00557 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99622 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00539 * 4.73991 * 9 7 2 11 11 N 1.34781 * 119.99923 * 185.01845 * 9 7 2 12 12 C 1.46836 * 120.38227 * 174.20729 * 11 9 7 13 13 C 1.53803 * 108.57153 * 123.09298 * 12 11 9 14 14 C 1.53181 * 108.71406 * 51.51532 * 13 12 11 15 15 C 1.52851 * 117.65783 * 89.90381 * 14 13 12 16 16 C 1.52816 * 117.71369 * 158.76001 * 14 13 12 17 17 C 1.53184 * 115.07470 * 304.42752 * 14 13 12 18 18 C 1.46846 * 120.37963 * 354.48379 * 11 9 7 19 19 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.57936 * 242.92151 * 12 11 9 21 21 H 1.09000 * 109.58038 * 3.32748 * 12 11 9 22 22 H 1.08999 * 109.71703 * 291.68299 * 13 12 11 23 23 H 1.09005 * 109.51075 * 171.21677 * 13 12 11 24 24 H 1.08998 * 117.50174 * 215.18196 * 15 14 13 25 25 H 1.08995 * 117.50297 * 0.23386 * 15 14 13 26 26 H 1.09001 * 117.50339 * 359.85877 * 16 14 13 27 27 H 1.09005 * 117.50084 * 144.87517 * 16 14 13 28 28 H 1.08991 * 109.59139 * 295.66147 * 17 14 13 29 29 H 1.09007 * 109.70366 * 175.29909 * 17 14 13 30 30 H 1.09004 * 109.57922 * 356.67890 * 18 11 9 31 31 H 1.08998 * 109.57797 * 116.93918 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0614 -2.4823 -0.0870 11 7 1.9450 -3.6455 0.1032 12 6 1.2151 -4.9131 0.2317 13 6 1.6483 -5.8458 -0.9120 14 6 3.1782 -5.9189 -0.9339 15 6 3.8486 -7.0072 -0.0957 16 6 3.8224 -7.1221 -1.6214 17 6 3.8911 -4.5678 -1.0468 18 6 3.4134 -3.6611 0.0938 19 1 -0.4850 0.8401 -0.0004 20 1 1.4497 -5.3740 1.1912 21 1 0.1433 -4.7257 0.1664 22 1 1.2874 -5.4538 -1.8629 23 1 1.2373 -6.8415 -0.7451 24 1 4.8016 -6.7648 0.3745 25 1 3.2013 -7.6766 0.4708 26 1 3.1579 -7.8673 -2.0587 27 1 4.7580 -6.9553 -2.1552 28 1 3.6512 -4.1070 -2.0049 29 1 4.9687 -4.7134 -0.9709 30 1 3.7885 -2.6495 -0.0620 31 1 3.7806 -4.0441 1.0459 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306437386.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:22 Heat of formation + Delta-G solvation = -39.095907 kcal Electronic energy + Delta-G solvation = -14027.923650 eV Core-core repulsion = 11694.819694 eV Total energy + Delta-G solvation = -2333.103956 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56657 -38.66802 -35.71562 -34.64051 -32.19750 -30.41902 -28.23973 -24.49978 -24.22128 -23.05796 -21.53719 -19.56895 -18.20086 -17.73437 -16.32303 -16.20395 -15.96664 -15.56203 -14.85490 -14.62748 -14.33845 -13.81807 -13.54664 -13.27269 -12.83946 -12.76718 -12.48864 -12.33916 -12.26920 -12.07099 -11.91557 -11.35536 -10.96676 -10.85618 -10.58390 -9.76626 -9.01815 -8.29090 -6.83716 1.39509 1.39913 1.57793 2.24059 2.45711 2.88983 2.94691 3.60943 3.77082 3.87311 4.03382 4.12120 4.30069 4.43148 4.62402 4.64742 4.81887 4.84784 4.93077 4.94859 5.05210 5.11755 5.14779 5.31790 5.35729 5.40951 5.45105 5.80425 6.16574 6.44522 6.88049 7.44723 8.47662 8.68000 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053795 B = 0.008756 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.368775 B = 3197.005623 C = 3552.619549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 0.997 3.003 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.538 3.462 10 O -0.636 6.636 11 N -0.644 5.644 12 C 0.120 3.880 13 C -0.084 4.084 14 C -0.142 4.142 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.088 4.088 18 C 0.120 3.880 19 H 0.273 0.727 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 -9.614 -0.956 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.166 1.166 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.606 4.606 8 H 0.113 0.887 9 C 0.344 3.656 10 O -0.524 6.524 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.122 4.122 14 C -0.142 4.142 15 C -0.198 4.198 16 C -0.200 4.200 17 C -0.126 4.126 18 C -0.003 4.003 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.392 -9.551 -0.994 14.149 hybrid contribution -0.322 0.765 -0.017 0.830 sum 10.070 -8.786 -1.010 13.402 Atomic orbital electron populations 1.70212 1.09648 1.28812 1.36824 1.27041 0.95511 1.05076 0.91192 0.84987 0.79540 0.75381 0.78497 1.16619 1.19476 1.19321 1.21568 0.94842 0.89793 1.54366 0.88701 1.18724 0.86581 0.84407 0.75878 1.90525 1.16740 1.87533 1.57588 1.47984 1.06654 1.05468 1.77888 1.21300 0.96252 0.84874 0.97965 1.21470 0.94036 0.99214 0.97483 1.21344 0.93631 0.91325 1.07892 1.23067 1.02427 1.00513 0.93752 1.23056 1.02648 0.98971 0.95291 1.21474 0.99838 0.93313 0.98018 1.21581 0.79845 1.00726 0.98121 0.91662 0.92063 0.93502 0.93967 0.89494 0.87773 0.88426 0.88353 0.87755 0.93357 0.88632 0.90151 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.69 11.84 21.84 0.26 -51.43 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 4 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.57 -32.82 8.86 24.83 0.22 -32.60 16 8 H 0.10 4.87 5.64 -2.91 -0.02 4.85 16 9 C 0.54 32.45 7.61 86.36 0.66 33.11 16 10 O -0.64 -44.32 14.42 -4.31 -0.06 -44.38 16 11 N -0.64 -30.67 2.91 -822.92 -2.40 -33.06 16 12 C 0.12 4.97 6.47 86.59 0.56 5.53 16 13 C -0.08 -2.75 5.85 30.93 0.18 -2.57 16 14 C -0.14 -3.90 1.94 -52.17 -0.10 -4.00 16 15 C -0.16 -3.38 9.94 30.55 0.30 -3.08 16 16 C -0.16 -3.36 9.99 30.54 0.31 -3.06 16 17 C -0.09 -2.65 5.83 30.77 0.18 -2.47 16 18 C 0.12 4.48 6.33 86.43 0.55 5.03 16 19 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 20 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 21 H 0.05 2.26 6.96 -2.39 -0.02 2.25 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.09 2.35 8.10 -2.38 -0.02 2.33 16 24 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 2.22 8.11 -2.38 -0.02 2.20 16 30 H 0.08 3.16 5.29 -2.38 -0.01 3.15 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.10 255.89 4.26 -71.84 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.11 Total: 15.79 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 3.32 Total: -2.14 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.14 Total: -84.49 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.06 Total: -44.38 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -76.10 4.26 -71.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306437386.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.742 kcal (2) G-P(sol) polarization free energy of solvation -76.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds