Wall clock time and date at job start Sun Mar 29 2020 21:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04040 * 2 1 4 4 C 1.35311 * 107.75028 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04309 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47095 * 299.99691 * 5 4 3 7 7 C 1.53001 * 109.46978 * 59.99815 * 5 4 3 8 8 N 1.46499 * 109.46817 * 179.97438 * 5 4 3 9 9 C 1.36946 * 119.99592 * 179.97438 * 8 5 4 10 10 H 1.07997 * 119.99493 * 0.02562 * 9 8 5 11 11 C 1.38813 * 119.99706 * 180.02562 * 9 8 5 12 12 N 1.31611 * 120.00218 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47148 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.46890 * 119.99992 * 13 11 9 16 16 H 1.48496 * 109.46990 * 240.00082 * 13 11 9 17 17 C 1.39876 * 107.91749 * 359.97438 * 4 3 2 18 18 N 1.30834 * 108.20073 * 0.27043 * 17 4 3 19 19 H 1.08995 * 109.47266 * 90.00219 * 1 2 3 20 20 H 1.08996 * 109.47009 * 210.00717 * 1 2 3 21 21 H 1.09011 * 109.46832 * 330.00309 * 1 2 3 22 22 H 1.08009 * 126.12562 * 359.96327 * 3 2 1 23 23 H 1.09001 * 109.47369 * 59.99709 * 6 5 4 24 24 H 1.08997 * 109.47308 * 180.02562 * 6 5 4 25 25 H 1.09007 * 109.47220 * 300.00101 * 6 5 4 26 26 H 1.08999 * 109.47114 * 60.00049 * 7 5 4 27 27 H 1.08997 * 109.46784 * 180.02562 * 7 5 4 28 28 H 1.09001 * 109.47184 * 300.00112 * 7 5 4 29 29 H 0.96990 * 120.00502 * 0.02562 * 8 5 4 30 30 H 0.97002 * 120.00017 * 179.97438 * 12 11 9 31 31 H 1.08002 * 125.89548 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7681 1.5452 -0.0002 6 6 4.7616 2.4293 -1.2488 7 6 4.7621 2.4277 1.2496 8 7 5.9701 0.7078 -0.0005 9 6 7.2098 1.2896 -0.0008 10 1 7.3012 2.3656 -0.0004 11 6 8.3488 0.4961 -0.0015 12 7 8.2373 -0.8153 -0.0024 13 14 10.0399 1.2897 -0.0012 14 1 9.8932 2.7674 0.0005 15 1 10.7855 0.8653 1.2109 16 1 10.7852 0.8671 -1.2141 17 6 3.5346 -0.7322 -0.0003 18 7 2.2891 -1.1328 -0.0055 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8901 0.5138 22 1 1.9282 2.1194 -0.0006 23 1 3.8672 3.0523 -1.2483 24 1 5.6473 3.0645 -1.2489 25 1 4.7658 1.8006 -2.1393 26 1 4.7667 1.7978 2.1391 27 1 5.6474 3.0636 1.2496 28 1 3.8677 3.0508 1.2502 29 1 5.8879 -0.2586 -0.0012 30 1 9.0332 -1.3698 -0.0033 31 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306440672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:50 Heat of formation + Delta-G solvation = 91.221543 kcal Electronic energy + Delta-G solvation = -13844.580624 eV Core-core repulsion = 11549.420407 eV Total energy + Delta-G solvation = -2295.160217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82160 -36.38161 -32.82630 -32.20257 -29.54994 -28.12728 -26.49099 -26.30914 -23.85975 -21.18523 -20.44752 -18.46407 -17.20918 -16.32545 -15.14426 -14.63558 -13.92241 -13.73871 -13.50104 -12.98451 -12.69787 -12.42807 -12.20831 -12.19486 -11.38233 -11.37229 -10.95737 -10.82101 -10.58113 -10.45060 -10.12118 -9.73741 -9.39626 -8.99499 -8.87356 -7.87245 -6.85789 -5.68424 -2.95467 2.27053 2.86682 3.34167 3.48756 3.53976 3.56248 4.64792 4.74962 5.15954 5.17630 5.38571 5.50221 5.64870 5.66229 5.91122 6.08407 6.19616 6.25263 6.37682 6.40852 6.73147 6.78978 6.97718 7.04400 7.17674 7.29099 7.39725 7.80252 8.12074 8.51398 9.62153 10.21062 10.56283 11.55155 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056448 B = 0.008161 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.916866 B = 3430.293180 C = 3735.153385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.389 5.389 3 C 0.042 3.958 4 C -0.205 4.205 5 C 0.267 3.733 6 C -0.145 4.145 7 C -0.145 4.145 8 N -0.718 5.718 9 C -0.227 4.227 10 H 0.072 0.928 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.903 3.097 14 H -0.281 1.281 15 H -0.293 1.293 16 H -0.293 1.293 17 C 0.066 3.934 18 N -0.308 5.308 19 H 0.067 0.933 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.167 0.833 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.383 0.617 30 H 0.253 0.747 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 4.876 0.082 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.172 5.172 3 C -0.103 4.103 4 C -0.216 4.216 5 C 0.174 3.826 6 C -0.204 4.204 7 C -0.204 4.204 8 N -0.361 5.361 9 C -0.358 4.358 10 H 0.090 0.910 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.735 3.265 14 H -0.206 1.206 15 H -0.221 1.221 16 H -0.220 1.220 17 C -0.120 4.120 18 N -0.130 5.130 19 H 0.086 0.914 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.184 0.816 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.219 0.781 30 H 0.063 0.937 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.642 3.977 0.079 15.173 hybrid contribution 1.492 0.802 -0.015 1.694 sum -13.150 4.780 0.064 13.992 Atomic orbital electron populations 1.21694 0.75178 1.03847 1.02701 1.48369 1.06068 1.04083 1.58708 1.22073 0.90875 0.92851 1.04462 1.20415 0.94472 0.94156 1.12580 1.17845 0.83364 0.88676 0.92690 1.22236 0.99714 0.99305 0.99166 1.22237 0.99710 0.99302 0.99163 1.42488 0.99837 1.05121 1.88633 1.19206 0.83348 0.91638 1.41596 0.91003 1.24699 0.97602 0.95370 1.03526 1.69657 1.27877 1.02534 1.58312 0.86162 0.85048 0.78207 0.77081 1.20648 1.22053 1.22049 1.23863 0.94690 0.95249 0.98235 1.77306 1.01910 1.08031 1.25718 0.91406 0.89802 0.90026 0.81575 0.94733 0.92522 0.93291 0.93279 0.92531 0.94744 0.78133 0.93681 0.79641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.47 59.85 0.69 1.71 16 2 N -0.39 -5.87 4.01 -68.16 -0.27 -6.15 16 3 C 0.04 0.65 10.80 -17.23 -0.19 0.46 16 4 C -0.20 -3.81 4.80 -105.05 -0.50 -4.32 16 5 C 0.27 5.40 1.04 -132.97 -0.14 5.26 16 6 C -0.14 -2.72 8.32 37.15 0.31 -2.41 16 7 C -0.14 -2.72 8.32 37.16 0.31 -2.41 16 8 N -0.72 -17.94 5.11 -48.31 -0.25 -18.18 16 9 C -0.23 -6.18 8.67 -15.05 -0.13 -6.31 16 10 H 0.07 1.90 6.69 -52.49 -0.35 1.55 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 13 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 C 0.07 1.29 11.15 -17.36 -0.19 1.09 16 18 N -0.31 -5.69 12.58 30.63 0.39 -5.30 16 19 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 22 H 0.17 1.97 8.06 -52.48 -0.42 1.54 16 23 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 24 H 0.06 1.11 7.27 -51.93 -0.38 0.74 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.11 7.27 -51.93 -0.38 0.73 16 28 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 29 H 0.38 10.11 5.66 -40.82 -0.23 9.88 16 30 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.19 3.76 6.71 -52.49 -0.35 3.40 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -32.04 262.37 -4.62 -36.65 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.19 Total: 6.57 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 0.06 Total: -7.49 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.59 Total: -57.12 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.04 -4.62 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306440672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.875 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds