Wall clock time and date at job start Sun Mar 29 2020 21:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04040 * 2 1 4 4 C 1.35311 * 107.75028 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04309 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47095 * 299.99691 * 5 4 3 7 7 C 1.53001 * 109.46978 * 59.99815 * 5 4 3 8 8 N 1.46499 * 109.46817 * 179.97438 * 5 4 3 9 9 C 1.36946 * 119.99592 * 179.97438 * 8 5 4 10 10 H 1.07997 * 119.99493 * 0.02562 * 9 8 5 11 11 C 1.38813 * 119.99706 * 180.02562 * 9 8 5 12 12 N 1.31611 * 120.00218 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99640 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47148 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.46890 * 119.99992 * 13 11 9 16 16 H 1.48496 * 109.46990 * 240.00082 * 13 11 9 17 17 C 1.39876 * 107.91749 * 359.97438 * 4 3 2 18 18 N 1.30834 * 108.20073 * 0.27043 * 17 4 3 19 19 H 1.08995 * 109.47266 * 90.00219 * 1 2 3 20 20 H 1.08996 * 109.47009 * 210.00717 * 1 2 3 21 21 H 1.09011 * 109.46832 * 330.00309 * 1 2 3 22 22 H 1.08009 * 126.12562 * 359.96327 * 3 2 1 23 23 H 1.09001 * 109.47369 * 59.99709 * 6 5 4 24 24 H 1.08997 * 109.47308 * 180.02562 * 6 5 4 25 25 H 1.09007 * 109.47220 * 300.00101 * 6 5 4 26 26 H 1.08999 * 109.47114 * 60.00049 * 7 5 4 27 27 H 1.08997 * 109.46784 * 180.02562 * 7 5 4 28 28 H 1.09001 * 109.47184 * 300.00112 * 7 5 4 29 29 H 0.96990 * 120.00502 * 0.02562 * 8 5 4 30 30 H 0.97002 * 120.00017 * 179.97438 * 12 11 9 31 31 H 1.08002 * 125.89548 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7681 1.5452 -0.0002 6 6 4.7616 2.4293 -1.2488 7 6 4.7621 2.4277 1.2496 8 7 5.9701 0.7078 -0.0005 9 6 7.2098 1.2896 -0.0008 10 1 7.3012 2.3656 -0.0004 11 6 8.3488 0.4961 -0.0015 12 7 8.2373 -0.8153 -0.0024 13 14 10.0399 1.2897 -0.0012 14 1 9.8932 2.7674 0.0005 15 1 10.7855 0.8653 1.2109 16 1 10.7852 0.8671 -1.2141 17 6 3.5346 -0.7322 -0.0003 18 7 2.2891 -1.1328 -0.0055 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8901 0.5138 22 1 1.9282 2.1194 -0.0006 23 1 3.8672 3.0523 -1.2483 24 1 5.6473 3.0645 -1.2489 25 1 4.7658 1.8006 -2.1393 26 1 4.7667 1.7978 2.1391 27 1 5.6474 3.0636 1.2496 28 1 3.8677 3.0508 1.2502 29 1 5.8879 -0.2586 -0.0012 30 1 9.0332 -1.3698 -0.0033 31 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306440672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:50 Heat of formation + Delta-G solvation = 69.088649 kcal Electronic energy + Delta-G solvation = -13845.540378 eV Core-core repulsion = 11549.420407 eV Total energy + Delta-G solvation = -2296.119971 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.12506 -38.02311 -34.45391 -33.69733 -31.24930 -29.68140 -27.80612 -27.64140 -25.77722 -22.65224 -21.74365 -19.94125 -19.09197 -17.79678 -16.44602 -16.24111 -15.44905 -15.36085 -15.12354 -14.32780 -14.19940 -13.70826 -13.41004 -13.34803 -13.18651 -12.91186 -12.72425 -12.52074 -12.30037 -12.03609 -11.89956 -11.56148 -11.09808 -10.91347 -10.25073 -9.24090 -8.84506 -7.84408 -5.10409 1.01751 1.50816 1.51321 1.60927 1.80518 1.92081 2.63195 3.50756 3.71016 3.89566 4.18589 4.37532 4.45809 4.51736 4.57412 4.70608 4.74830 4.90992 4.99212 5.00385 5.20022 5.27518 5.37218 5.52365 5.68139 5.73673 5.77756 6.28160 6.39303 6.79356 7.44681 8.24237 8.46799 9.40686 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056448 B = 0.008161 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.916866 B = 3430.293180 C = 3735.153385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.378 5.378 3 C 0.069 3.931 4 C -0.237 4.237 5 C 0.259 3.741 6 C -0.137 4.137 7 C -0.137 4.137 8 N -0.733 5.733 9 C -0.214 4.214 10 H 0.080 0.920 11 C -0.085 4.085 12 N -0.975 5.975 13 Si 0.966 3.034 14 H -0.264 1.264 15 H -0.299 1.299 16 H -0.299 1.299 17 C 0.040 3.960 18 N -0.333 5.333 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.120 0.880 22 H 0.214 0.786 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.371 0.629 30 H 0.246 0.754 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 7.367 0.100 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.161 5.161 3 C -0.078 4.078 4 C -0.248 4.248 5 C 0.168 3.832 6 C -0.196 4.196 7 C -0.196 4.196 8 N -0.374 5.374 9 C -0.346 4.346 10 H 0.098 0.902 11 C -0.276 4.276 12 N -0.628 5.628 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.226 1.226 16 H -0.226 1.226 17 C -0.145 4.145 18 N -0.156 5.156 19 H 0.104 0.896 20 H 0.106 0.894 21 H 0.138 0.862 22 H 0.231 0.769 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.204 0.796 30 H 0.055 0.945 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.025 6.504 0.097 18.225 hybrid contribution 1.990 0.065 -0.023 1.992 sum -15.034 6.569 0.074 16.407 Atomic orbital electron populations 1.22212 0.71687 1.06023 1.04613 1.48825 1.07914 1.03119 1.56268 1.22607 0.89374 0.94599 1.01200 1.20329 0.95414 0.93375 1.15716 1.18112 0.82337 0.88838 0.93904 1.22135 1.01148 0.98903 0.97409 1.22134 1.01150 0.98898 0.97400 1.42778 1.00978 1.05205 1.88473 1.19573 0.84379 0.91969 1.38698 0.90212 1.25482 1.01196 0.95899 1.05037 1.69827 1.28161 1.03903 1.60870 0.85152 0.80726 0.78201 0.76260 1.18802 1.22631 1.22627 1.23607 0.94693 0.95981 1.00198 1.77226 1.01775 1.09967 1.26609 0.89562 0.89419 0.86188 0.76912 0.90451 0.93873 0.95113 0.95079 0.93889 0.90448 0.79592 0.94466 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 11.47 127.77 1.47 2.84 16 2 N -0.38 -10.23 4.01 -369.56 -1.48 -11.71 16 3 C 0.07 1.84 10.80 83.54 0.90 2.75 16 4 C -0.24 -8.51 4.80 -20.14 -0.10 -8.61 16 5 C 0.26 10.19 1.04 2.86 0.00 10.19 16 6 C -0.14 -4.85 8.32 71.98 0.60 -4.25 16 7 C -0.14 -4.83 8.32 71.98 0.60 -4.24 16 8 N -0.73 -37.43 5.11 -306.75 -1.57 -38.99 16 9 C -0.21 -11.81 8.67 84.03 0.73 -11.08 16 10 H 0.08 4.19 6.69 -2.91 -0.02 4.17 16 11 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 12 N -0.98 -61.16 13.06 21.65 0.28 -60.88 16 13 Si 0.97 47.01 29.55 68.60 2.03 49.03 16 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 17 C 0.04 1.60 11.15 85.24 0.95 2.55 16 18 N -0.33 -12.13 12.58 -57.02 -0.72 -12.85 16 19 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 23 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 24 H 0.04 1.61 7.27 -2.39 -0.02 1.60 16 25 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.61 7.27 -2.39 -0.02 1.59 16 28 H 0.08 2.04 8.00 -2.39 -0.02 2.02 16 29 H 0.37 20.57 5.66 -92.72 -0.52 20.05 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.16 7.05 6.71 -2.91 -0.02 7.03 16 Total: -1.00 -71.81 262.37 4.75 -67.06 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.59 Total: 22.67 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 5.62 Total: -14.33 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -3.48 Total: -124.43 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -71.81 4.75 -67.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306440672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.147 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds