Wall clock time and date at job start Sun Mar 29 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47083 * 5.53037 * 3 2 1 5 5 H 1.48503 * 109.47158 * 125.53324 * 3 2 1 6 6 H 1.48504 * 109.46961 * 245.53079 * 3 2 1 7 7 C 1.38810 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00167 * 344.75957 * 7 2 1 9 9 N 1.36944 * 119.99919 * 164.76523 * 7 2 1 10 10 C 1.47081 * 125.62697 * 349.99151 * 9 7 2 11 11 C 1.54457 * 107.29696 * 180.98551 * 10 9 7 12 12 C 1.54388 * 102.86752 * 21.50752 * 11 10 9 13 13 C 1.47572 * 125.62410 * 169.68701 * 9 7 2 14 14 C 1.52067 * 110.54106 * 207.32782 * 12 11 10 15 15 C 1.53157 * 109.58409 * 294.52974 * 14 12 11 16 16 C 1.53009 * 109.37858 * 301.36432 * 15 14 12 17 17 C 1.53002 * 109.59696 * 60.63381 * 16 15 14 18 18 C 1.52071 * 110.53585 * 83.37203 * 12 11 10 19 19 H 0.97000 * 119.99860 * 174.97492 * 1 2 3 20 20 H 1.08996 * 109.87989 * 300.40833 * 10 9 7 21 21 H 1.08997 * 109.87586 * 61.55979 * 10 9 7 22 22 H 1.08996 * 110.73357 * 139.85422 * 11 10 9 23 23 H 1.09006 * 110.73265 * 262.98541 * 11 10 9 24 24 H 1.08995 * 110.37884 * 275.50664 * 13 9 7 25 25 H 1.08999 * 110.37744 * 37.86173 * 13 9 7 26 26 H 1.09002 * 109.45146 * 54.55990 * 14 12 11 27 27 H 1.09000 * 109.45865 * 174.49295 * 14 12 11 28 28 H 1.08999 * 109.48695 * 181.39127 * 15 14 12 29 29 H 1.08996 * 109.48889 * 61.33399 * 15 14 12 30 30 H 1.08996 * 109.45400 * 300.59151 * 16 15 14 31 31 H 1.09004 * 109.42650 * 180.65913 * 16 15 14 32 32 H 1.09004 * 109.48977 * 179.39397 * 17 16 15 33 33 H 1.09000 * 109.49019 * 59.33838 * 17 16 15 34 34 H 1.09001 * 109.45091 * 185.50404 * 18 12 11 35 35 H 1.09005 * 109.45345 * 305.43643 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2907 2.7432 0.1349 5 1 3.2023 1.6397 1.1394 6 1 2.9999 1.7565 -1.2744 7 6 2.0102 -1.2021 -0.0005 8 1 1.4988 -2.1211 0.2449 9 7 3.3436 -1.2228 -0.3122 10 6 4.1125 -0.0958 -0.8618 11 6 5.5608 -0.5886 -1.0749 12 6 5.3953 -2.1219 -1.1461 13 6 4.2474 -2.3775 -0.1461 14 6 6.6679 -2.8177 -0.6890 15 6 7.8019 -2.5110 -1.6716 16 6 7.4032 -2.9845 -3.0709 17 6 6.1417 -2.2459 -3.5225 18 6 4.9985 -2.5511 -2.5499 19 1 -0.4850 -0.8368 -0.0736 20 1 3.6834 0.2163 -1.8139 21 1 4.1040 0.7367 -0.1584 22 1 5.9669 -0.2005 -2.0090 23 1 6.1928 -0.3045 -0.2334 24 1 4.6303 -2.4161 0.8737 25 1 3.7289 -3.3039 -0.3931 26 1 6.9409 -2.4595 0.3037 27 1 6.5002 -3.8941 -0.6527 28 1 8.7068 -3.0304 -1.3561 29 1 7.9866 -1.4370 -1.6901 30 1 7.2081 -4.0567 -3.0494 31 1 8.2146 -2.7772 -3.7686 32 1 5.8654 -2.5767 -4.5237 33 1 6.3328 -1.1729 -3.5336 34 1 4.7916 -3.6212 -2.5575 35 1 4.1055 -2.0068 -2.8572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306507095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:35 Heat of formation + Delta-G solvation = 7.782308 kcal Electronic energy + Delta-G solvation = -14751.857926 eV Core-core repulsion = 12556.619856 eV Total energy + Delta-G solvation = -2195.238070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68315 -35.83715 -32.47018 -30.70776 -30.15041 -28.91490 -25.53617 -23.13806 -22.38603 -21.39312 -20.02234 -18.25399 -17.11807 -15.54369 -15.18305 -14.70886 -13.85755 -13.64115 -13.54867 -13.35770 -12.67799 -12.27328 -12.07897 -11.90166 -11.59093 -11.12064 -11.02188 -11.00683 -10.80370 -10.58968 -10.05356 -9.93837 -9.69917 -9.63480 -9.24198 -8.86583 -8.61273 -6.93366 -6.24329 -3.13578 3.47655 3.54939 3.76928 4.68580 4.79129 4.89980 4.95146 5.15774 5.28080 5.44739 5.48495 5.54414 5.61760 5.66504 5.72981 5.82689 5.88184 6.00354 6.10415 6.14942 6.22681 6.25466 6.33016 6.35446 6.52020 6.53110 6.56105 6.66249 6.81811 6.89975 6.95564 7.76388 8.40949 9.12233 9.64805 10.32937 11.26595 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051730 B = 0.009865 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.146548 B = 2837.767186 C = 2939.446240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.024 4.024 3 Si 1.072 2.928 4 H -0.303 1.303 5 H -0.300 1.300 6 H -0.287 1.287 7 C -0.317 4.317 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.112 3.888 11 C -0.120 4.120 12 C -0.070 4.070 13 C 0.145 3.855 14 C -0.101 4.101 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.097 4.097 19 H 0.260 0.740 20 H 0.043 0.957 21 H 0.025 0.975 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.021 0.979 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.654 -4.467 -5.117 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.906 3.094 4 H -0.232 1.232 5 H -0.229 1.229 6 H -0.214 1.214 7 C -0.445 4.445 8 H 0.095 0.905 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.158 4.158 12 C -0.071 4.071 13 C 0.019 3.981 14 C -0.139 4.139 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.135 4.135 19 H 0.070 0.930 20 H 0.061 0.939 21 H 0.042 0.958 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.344 -2.839 -5.028 16.395 hybrid contribution 0.185 -1.688 0.072 1.699 sum 15.529 -4.527 -4.956 16.918 Atomic orbital electron populations 1.70893 1.05731 1.29110 1.51630 1.25826 0.96481 1.00865 0.99133 0.83820 0.73032 0.76247 0.76284 1.23190 1.22876 1.21404 1.20183 0.82240 0.96070 1.45993 0.90547 1.44870 1.06139 1.08193 1.74801 1.21980 0.90839 0.91639 0.96824 1.22619 0.96994 0.95217 1.00998 1.21114 0.94976 0.95070 0.95891 1.21575 0.89839 0.91715 0.95007 1.21341 0.94157 1.00101 0.98336 1.21546 0.97609 1.01191 0.95130 1.21512 0.97412 1.00007 0.96485 1.21612 0.95256 1.00461 0.98446 1.21249 0.98028 1.00764 0.93442 0.92995 0.93938 0.95825 0.91309 0.91876 0.96104 0.94045 0.92071 0.92255 0.92604 0.91978 0.92338 0.92713 0.92504 0.91909 0.92530 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.09 13.70 55.49 0.76 -29.33 16 2 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 3 Si 1.07 27.89 24.53 -169.99 -4.17 23.72 16 4 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 5 H -0.30 -7.58 6.84 56.52 0.39 -7.20 16 6 H -0.29 -6.84 5.41 56.52 0.31 -6.53 16 7 C -0.32 -9.40 10.56 -15.06 -0.16 -9.56 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 N -0.61 -15.53 3.32 -170.17 -0.56 -16.10 16 10 C 0.11 2.54 4.22 -2.96 -0.01 2.52 16 11 C -0.12 -2.10 4.89 -25.24 -0.12 -2.23 16 12 C -0.07 -1.15 0.55 -154.01 -0.08 -1.24 16 13 C 0.14 3.01 6.16 -2.74 -0.02 2.99 16 14 C -0.10 -1.37 4.67 -27.12 -0.13 -1.49 16 15 C -0.12 -1.34 5.76 -26.65 -0.15 -1.50 16 16 C -0.12 -1.30 5.90 -26.73 -0.16 -1.46 16 17 C -0.12 -1.54 5.75 -26.65 -0.15 -1.70 16 18 C -0.10 -1.54 4.71 -27.12 -0.13 -1.67 16 19 H 0.26 8.30 8.73 -40.82 -0.36 7.94 16 20 H 0.04 1.01 6.73 -51.93 -0.35 0.66 16 21 H 0.02 0.58 3.87 -51.93 -0.20 0.38 16 22 H 0.07 1.07 6.18 -51.93 -0.32 0.74 16 23 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 24 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 25 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 26 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.72 7.49 -51.93 -0.39 0.33 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.81 6.41 -51.93 -0.33 0.48 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.33 7.80 -51.93 -0.40 0.92 16 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -31.74 255.78 -7.22 -38.96 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.89 Total: -4.94 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.21 Total: -16.16 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.20 Total: -45.43 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: -4.17 Total: 23.72 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.74 -7.22 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306507095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.737 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds