Wall clock time and date at job start Sun Mar 29 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47083 * 5.53037 * 3 2 1 5 5 H 1.48503 * 109.47158 * 125.53324 * 3 2 1 6 6 H 1.48504 * 109.46961 * 245.53079 * 3 2 1 7 7 C 1.38810 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00167 * 344.75957 * 7 2 1 9 9 N 1.36944 * 119.99919 * 164.76523 * 7 2 1 10 10 C 1.47081 * 125.62697 * 349.99151 * 9 7 2 11 11 C 1.54457 * 107.29696 * 180.98551 * 10 9 7 12 12 C 1.54388 * 102.86752 * 21.50752 * 11 10 9 13 13 C 1.47572 * 125.62410 * 169.68701 * 9 7 2 14 14 C 1.52067 * 110.54106 * 207.32782 * 12 11 10 15 15 C 1.53157 * 109.58409 * 294.52974 * 14 12 11 16 16 C 1.53009 * 109.37858 * 301.36432 * 15 14 12 17 17 C 1.53002 * 109.59696 * 60.63381 * 16 15 14 18 18 C 1.52071 * 110.53585 * 83.37203 * 12 11 10 19 19 H 0.97000 * 119.99860 * 174.97492 * 1 2 3 20 20 H 1.08996 * 109.87989 * 300.40833 * 10 9 7 21 21 H 1.08997 * 109.87586 * 61.55979 * 10 9 7 22 22 H 1.08996 * 110.73357 * 139.85422 * 11 10 9 23 23 H 1.09006 * 110.73265 * 262.98541 * 11 10 9 24 24 H 1.08995 * 110.37884 * 275.50664 * 13 9 7 25 25 H 1.08999 * 110.37744 * 37.86173 * 13 9 7 26 26 H 1.09002 * 109.45146 * 54.55990 * 14 12 11 27 27 H 1.09000 * 109.45865 * 174.49295 * 14 12 11 28 28 H 1.08999 * 109.48695 * 181.39127 * 15 14 12 29 29 H 1.08996 * 109.48889 * 61.33399 * 15 14 12 30 30 H 1.08996 * 109.45400 * 300.59151 * 16 15 14 31 31 H 1.09004 * 109.42650 * 180.65913 * 16 15 14 32 32 H 1.09004 * 109.48977 * 179.39397 * 17 16 15 33 33 H 1.09000 * 109.49019 * 59.33838 * 17 16 15 34 34 H 1.09001 * 109.45091 * 185.50404 * 18 12 11 35 35 H 1.09005 * 109.45345 * 305.43643 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2907 2.7432 0.1349 5 1 3.2023 1.6397 1.1394 6 1 2.9999 1.7565 -1.2744 7 6 2.0102 -1.2021 -0.0005 8 1 1.4988 -2.1211 0.2449 9 7 3.3436 -1.2228 -0.3122 10 6 4.1125 -0.0958 -0.8618 11 6 5.5608 -0.5886 -1.0749 12 6 5.3953 -2.1219 -1.1461 13 6 4.2474 -2.3775 -0.1461 14 6 6.6679 -2.8177 -0.6890 15 6 7.8019 -2.5110 -1.6716 16 6 7.4032 -2.9845 -3.0709 17 6 6.1417 -2.2459 -3.5225 18 6 4.9985 -2.5511 -2.5499 19 1 -0.4850 -0.8368 -0.0736 20 1 3.6834 0.2163 -1.8139 21 1 4.1040 0.7367 -0.1584 22 1 5.9669 -0.2005 -2.0090 23 1 6.1928 -0.3045 -0.2334 24 1 4.6303 -2.4161 0.8737 25 1 3.7289 -3.3039 -0.3931 26 1 6.9409 -2.4595 0.3037 27 1 6.5002 -3.8941 -0.6527 28 1 8.7068 -3.0304 -1.3561 29 1 7.9866 -1.4370 -1.6901 30 1 7.2081 -4.0567 -3.0494 31 1 8.2146 -2.7772 -3.7686 32 1 5.8654 -2.5767 -4.5237 33 1 6.3328 -1.1729 -3.5336 34 1 4.7916 -3.6212 -2.5575 35 1 4.1055 -2.0068 -2.8572 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306507095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:35 Heat of formation + Delta-G solvation = -12.590145 kcal Electronic energy + Delta-G solvation = -14752.741341 eV Core-core repulsion = 12556.619856 eV Total energy + Delta-G solvation = -2196.121486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04742 -37.37247 -34.50752 -31.99025 -31.60492 -30.56527 -27.20969 -24.87625 -23.46620 -22.93401 -21.53209 -19.95415 -18.87938 -17.22210 -16.73800 -16.01627 -15.53258 -15.09753 -14.92142 -14.72283 -14.50787 -13.73759 -13.43846 -13.27013 -13.01121 -12.93373 -12.52998 -12.35352 -11.94900 -11.93927 -11.69991 -11.45553 -11.19226 -10.99130 -10.83330 -10.80672 -10.61494 -9.08190 -8.67667 -5.47821 1.37991 1.47220 1.70269 2.52762 3.09845 3.32599 3.57402 3.79940 3.84373 4.12006 4.25393 4.35879 4.37298 4.45162 4.56136 4.67966 4.68528 4.72580 4.82355 4.86381 4.91512 5.07168 5.14629 5.21827 5.25988 5.27744 5.33421 5.43017 5.45810 5.51155 5.66219 5.67617 6.08920 6.81507 7.44506 8.10283 8.85358 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051730 B = 0.009865 C = 0.009523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.146548 B = 2837.767186 C = 2939.446240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.082 4.082 3 Si 1.112 2.888 4 H -0.311 1.311 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.310 4.310 8 H 0.043 0.957 9 N -0.633 5.633 10 C 0.101 3.899 11 C -0.110 4.110 12 C -0.058 4.058 13 C 0.136 3.864 14 C -0.098 4.098 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.097 4.097 19 H 0.246 0.754 20 H 0.029 0.971 21 H 0.020 0.980 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.456 -4.144 -5.979 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.275 4.275 3 Si 0.940 3.060 4 H -0.241 1.241 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.439 4.439 8 H 0.061 0.939 9 N -0.360 5.360 10 C -0.023 4.023 11 C -0.147 4.147 12 C -0.059 4.059 13 C 0.011 3.989 14 C -0.136 4.136 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.134 4.134 19 H 0.055 0.945 20 H 0.047 0.953 21 H 0.037 0.963 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.196 -2.554 -5.903 20.245 hybrid contribution -1.057 -1.934 0.359 2.233 sum 18.139 -4.489 -5.543 19.491 Atomic orbital electron populations 1.70995 1.06972 1.28321 1.54718 1.27147 0.96530 1.04496 0.99290 0.83341 0.72341 0.71988 0.78296 1.24067 1.21430 1.17754 1.20095 0.84639 0.94765 1.44399 0.93925 1.44970 1.05384 1.10734 1.74916 1.22139 0.93729 0.90854 0.95580 1.22642 0.93610 0.95277 1.03185 1.21066 0.94726 0.95176 0.94893 1.21826 0.90672 0.89724 0.96671 1.21327 0.93021 0.99983 0.99242 1.21545 0.97277 1.01848 0.94390 1.21510 0.96891 0.99862 0.96847 1.21585 0.94778 1.00980 0.97918 1.21221 0.98036 1.00180 0.94008 0.94507 0.95298 0.96251 0.88607 0.89979 0.95716 0.95365 0.91625 0.91777 0.90421 0.91490 0.92079 0.90552 0.91636 0.91623 0.92567 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.71 13.70 21.65 0.30 -64.42 16 2 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 3 Si 1.11 56.46 24.53 68.60 1.68 58.14 16 4 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 5 H -0.29 -13.78 6.84 99.48 0.68 -13.10 16 6 H -0.25 -11.35 5.41 99.48 0.54 -10.81 16 7 C -0.31 -19.02 10.56 84.03 0.89 -18.13 16 8 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 9 N -0.63 -32.26 3.32 -692.28 -2.30 -34.56 16 10 C 0.10 4.42 4.22 86.76 0.37 4.78 16 11 C -0.11 -3.45 4.89 31.56 0.15 -3.30 16 12 C -0.06 -1.78 0.55 -51.86 -0.03 -1.81 16 13 C 0.14 5.61 6.16 86.64 0.53 6.15 16 14 C -0.10 -2.27 4.67 30.34 0.14 -2.12 16 15 C -0.11 -2.01 5.76 30.65 0.18 -1.83 16 16 C -0.11 -2.00 5.90 30.60 0.18 -1.82 16 17 C -0.12 -2.56 5.75 30.65 0.18 -2.38 16 18 C -0.10 -2.91 4.71 30.34 0.14 -2.77 16 19 H 0.25 16.56 8.73 -92.71 -0.81 15.75 16 20 H 0.03 1.34 6.73 -2.39 -0.02 1.32 16 21 H 0.02 0.90 3.87 -2.39 -0.01 0.89 16 22 H 0.10 2.54 6.18 -2.39 -0.01 2.53 16 23 H 0.08 2.31 7.97 -2.38 -0.02 2.30 16 24 H 0.02 1.01 8.01 -2.39 -0.02 0.99 16 25 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 26 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.16 7.49 -2.39 -0.02 1.15 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.43 6.41 -2.39 -0.02 1.41 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 1.26 7.80 -2.38 -0.02 1.24 16 Total: -1.00 -71.12 255.78 3.69 -67.43 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 0.81 Total: 1.33 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.20 Total: -27.92 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -2.00 Total: -98.97 kcal Atomic # 14 Polarization: 56.46 SS G_CDS: 1.68 Total: 58.14 kcal Total: -71.12 3.69 -67.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306507095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.840 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds