Wall clock time and date at job start Sun Mar 29 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36822 * 119.99926 * 2 1 4 4 H 1.07999 * 119.99286 * 139.29842 * 3 2 1 5 5 C 1.39067 * 119.99895 * 319.29514 * 3 2 1 6 6 N 1.31358 * 119.99793 * 161.92614 * 5 3 2 7 7 Si 1.86805 * 120.00552 * 341.92769 * 5 3 2 8 8 H 1.48498 * 109.46858 * 90.27499 * 7 5 3 9 9 H 1.48494 * 109.47071 * 210.27769 * 7 5 3 10 10 H 1.48503 * 109.46871 * 330.27713 * 7 5 3 11 11 C 1.34779 * 119.99998 * 180.02562 * 2 1 3 12 12 O 1.21652 * 119.99962 * 184.41171 * 11 2 1 13 13 C 1.46948 * 119.99628 * 4.40971 * 11 2 1 14 14 C 1.31680 * 118.11570 * 280.08325 * 13 11 2 15 15 C 1.50103 * 123.77231 * 180.42330 * 14 13 11 16 16 C 1.53003 * 110.13403 * 342.82676 * 15 14 13 17 17 C 1.53052 * 108.47115 * 49.73763 * 16 15 14 18 18 C 1.50107 * 118.11289 * 100.06608 * 13 11 2 19 19 H 1.09001 * 109.46851 * 264.48570 * 1 2 3 20 20 H 1.09000 * 109.47273 * 24.48237 * 1 2 3 21 21 H 1.08998 * 109.47638 * 144.48732 * 1 2 3 22 22 H 0.96996 * 119.99805 * 179.97438 * 6 5 3 23 23 H 1.07997 * 118.11687 * 0.44350 * 14 13 11 24 24 H 1.08999 * 109.36454 * 103.03798 * 15 14 13 25 25 H 1.09002 * 109.35571 * 222.62588 * 15 14 13 26 26 H 1.09005 * 109.63022 * 169.47858 * 16 15 14 27 27 H 1.09000 * 109.63199 * 290.06399 * 16 15 14 28 28 H 1.09000 * 109.46399 * 172.17710 * 17 16 15 29 29 H 1.09002 * 109.63864 * 51.69400 * 17 16 15 30 30 H 1.09000 * 109.35931 * 283.02844 * 18 13 11 31 31 H 1.09003 * 109.35713 * 42.75742 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.0332 1.2979 0.6100 5 6 1.7061 2.2436 -0.7854 6 7 2.1208 3.4648 -0.5362 7 14 0.5212 1.9291 -2.1950 8 1 -0.8751 2.0429 -1.7025 9 1 0.7510 2.9301 -3.2675 10 1 0.7458 0.5642 -2.7353 11 6 2.1389 -1.1672 -0.0005 12 8 3.3527 -1.1688 0.0805 13 6 1.4074 -2.4379 -0.0989 14 6 0.8465 -2.9171 0.9918 15 6 0.0785 -4.2059 1.0380 16 6 -0.3145 -4.6358 -0.3769 17 6 0.9309 -4.5782 -1.2647 18 6 1.3421 -3.1147 -1.4372 19 1 -0.3633 -0.0988 1.0229 20 1 -0.3634 0.9353 -0.4259 21 1 -0.3634 -0.8365 -0.5969 22 1 1.8121 4.2031 -1.0842 23 1 0.9443 -2.3500 1.9057 24 1 0.6978 -4.9796 1.4919 25 1 -0.8217 -4.0688 1.6371 26 1 -0.7033 -5.6540 -0.3555 27 1 -1.0742 -3.9588 -0.7676 28 1 0.7032 -5.0119 -2.2384 29 1 1.7423 -5.1336 -0.7941 30 1 0.6106 -2.6053 -2.0644 31 1 2.3214 -3.0682 -1.9137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306510716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:20 Heat of formation + Delta-G solvation = -21.816325 kcal Electronic energy + Delta-G solvation = -14096.117100 eV Core-core repulsion = 11763.762442 eV Total energy + Delta-G solvation = -2332.354658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.30092 -37.22435 -34.71494 -32.11023 -30.82068 -30.56379 -26.41193 -25.15748 -23.09234 -22.34830 -19.69945 -17.46493 -17.04845 -16.18142 -15.67911 -14.51232 -14.45552 -14.12453 -13.59739 -13.17370 -12.99839 -12.65687 -12.35067 -12.15151 -12.08826 -11.84598 -11.63491 -10.81343 -10.72584 -10.55139 -10.31751 -10.23935 -9.93717 -9.08920 -8.63350 -8.35943 -7.68327 -6.37087 -3.98715 2.35982 3.03102 3.21460 3.26644 3.72146 4.15785 4.51429 4.89538 4.93944 4.99342 5.06479 5.48616 5.51658 5.60620 5.68752 5.70242 5.88388 5.92551 5.98167 6.09263 6.15598 6.20553 6.29686 6.35131 6.41684 6.81354 7.17294 7.58719 8.31592 8.53627 8.96602 9.32336 9.79003 10.74999 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044195 B = 0.010309 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.396950 B = 2715.418469 C = 2891.104948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.466 5.466 3 C -0.319 4.319 4 H 0.104 0.896 5 C 0.059 3.941 6 N -0.867 5.867 7 Si 0.883 3.117 8 H -0.274 1.274 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.498 3.502 12 O -0.563 6.563 13 C -0.126 4.126 14 C -0.144 4.144 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.075 4.075 19 H 0.049 0.951 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.274 0.726 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -13.181 -1.095 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.188 5.188 3 C -0.446 4.446 4 H 0.121 0.879 5 C -0.146 4.146 6 N -0.504 5.504 7 Si 0.711 3.289 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.188 1.188 11 C 0.286 3.714 12 O -0.445 6.445 13 C -0.129 4.129 14 C -0.163 4.163 15 C -0.121 4.121 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.112 4.112 19 H 0.068 0.932 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.065 -12.925 -1.097 15.274 hybrid contribution -0.680 0.189 -0.685 0.984 sum -8.745 -12.736 -1.782 15.552 Atomic orbital electron populations 1.22015 0.83342 1.01565 1.00942 1.43606 1.04073 1.05532 1.65552 1.19040 1.12536 0.86642 1.26373 0.87851 1.25434 0.97398 0.94816 0.97002 1.69697 1.43950 0.98683 1.38042 0.86909 0.80281 0.79014 0.82737 1.20071 1.21451 1.18838 1.18536 0.87500 0.83829 0.81522 1.90669 1.13729 1.87060 1.52995 1.21020 0.98763 0.96843 0.96301 1.22417 0.98627 0.97669 0.97612 1.20412 0.99198 0.95290 0.97223 1.21559 0.97884 1.00933 0.95443 1.21528 0.97975 0.96252 0.99679 1.20278 1.02426 0.94606 0.93905 0.93206 0.91468 0.92758 0.91569 0.87644 0.91005 0.91067 0.91900 0.91696 0.91739 0.91625 0.90819 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 8.49 59.85 0.51 1.85 16 2 N -0.47 -11.85 2.53 -123.60 -0.31 -12.17 16 3 C -0.32 -9.37 9.35 -15.02 -0.14 -9.51 16 4 H 0.10 3.41 7.93 -52.49 -0.42 2.99 16 5 C 0.06 1.68 5.32 -17.45 -0.09 1.59 16 6 N -0.87 -25.63 13.95 55.50 0.77 -24.86 16 7 Si 0.88 20.97 25.09 -169.99 -4.27 16.71 16 8 H -0.27 -5.99 6.51 56.52 0.37 -5.62 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.50 12.36 6.76 -12.73 -0.09 12.27 16 12 O -0.56 -16.33 16.99 5.23 0.09 -16.24 16 13 C -0.13 -2.39 3.86 -103.26 -0.40 -2.79 16 14 C -0.14 -2.33 9.14 -36.47 -0.33 -2.67 16 15 C -0.08 -1.01 6.11 -28.17 -0.17 -1.18 16 16 C -0.12 -1.33 5.99 -26.70 -0.16 -1.49 16 17 C -0.12 -1.43 5.97 -26.70 -0.16 -1.59 16 18 C -0.07 -1.20 5.80 -28.17 -0.16 -1.37 16 19 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 20 H 0.07 1.45 3.53 -51.93 -0.18 1.27 16 21 H 0.05 0.98 7.02 -51.93 -0.36 0.61 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.11 1.78 7.95 -52.49 -0.42 1.36 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 254.05 15.07 3.83 3.83 Total: -1.00 -32.80 254.05 -5.44 -38.23 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.35 Total: -0.62 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.20 Total: -4.88 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.46 Total: -37.02 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.09 Total: -16.24 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.27 Total: 16.71 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.80 -5.44 -38.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306510716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.416 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds