Wall clock time and date at job start Sun Mar 29 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36822 * 119.99926 * 2 1 4 4 H 1.07999 * 119.99286 * 139.29842 * 3 2 1 5 5 C 1.39067 * 119.99895 * 319.29514 * 3 2 1 6 6 N 1.31358 * 119.99793 * 161.92614 * 5 3 2 7 7 Si 1.86805 * 120.00552 * 341.92769 * 5 3 2 8 8 H 1.48498 * 109.46858 * 90.27499 * 7 5 3 9 9 H 1.48494 * 109.47071 * 210.27769 * 7 5 3 10 10 H 1.48503 * 109.46871 * 330.27713 * 7 5 3 11 11 C 1.34779 * 119.99998 * 180.02562 * 2 1 3 12 12 O 1.21652 * 119.99962 * 184.41171 * 11 2 1 13 13 C 1.46948 * 119.99628 * 4.40971 * 11 2 1 14 14 C 1.31680 * 118.11570 * 280.08325 * 13 11 2 15 15 C 1.50103 * 123.77231 * 180.42330 * 14 13 11 16 16 C 1.53003 * 110.13403 * 342.82676 * 15 14 13 17 17 C 1.53052 * 108.47115 * 49.73763 * 16 15 14 18 18 C 1.50107 * 118.11289 * 100.06608 * 13 11 2 19 19 H 1.09001 * 109.46851 * 264.48570 * 1 2 3 20 20 H 1.09000 * 109.47273 * 24.48237 * 1 2 3 21 21 H 1.08998 * 109.47638 * 144.48732 * 1 2 3 22 22 H 0.96996 * 119.99805 * 179.97438 * 6 5 3 23 23 H 1.07997 * 118.11687 * 0.44350 * 14 13 11 24 24 H 1.08999 * 109.36454 * 103.03798 * 15 14 13 25 25 H 1.09002 * 109.35571 * 222.62588 * 15 14 13 26 26 H 1.09005 * 109.63022 * 169.47858 * 16 15 14 27 27 H 1.09000 * 109.63199 * 290.06399 * 16 15 14 28 28 H 1.09000 * 109.46399 * 172.17710 * 17 16 15 29 29 H 1.09002 * 109.63864 * 51.69400 * 17 16 15 30 30 H 1.09000 * 109.35931 * 283.02844 * 18 13 11 31 31 H 1.09003 * 109.35713 * 42.75742 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.0332 1.2979 0.6100 5 6 1.7061 2.2436 -0.7854 6 7 2.1208 3.4648 -0.5362 7 14 0.5212 1.9291 -2.1950 8 1 -0.8751 2.0429 -1.7025 9 1 0.7510 2.9301 -3.2675 10 1 0.7458 0.5642 -2.7353 11 6 2.1389 -1.1672 -0.0005 12 8 3.3527 -1.1688 0.0805 13 6 1.4074 -2.4379 -0.0989 14 6 0.8465 -2.9171 0.9918 15 6 0.0785 -4.2059 1.0380 16 6 -0.3145 -4.6358 -0.3769 17 6 0.9309 -4.5782 -1.2647 18 6 1.3421 -3.1147 -1.4372 19 1 -0.3633 -0.0988 1.0229 20 1 -0.3634 0.9353 -0.4259 21 1 -0.3634 -0.8365 -0.5969 22 1 1.8121 4.2031 -1.0842 23 1 0.9443 -2.3500 1.9057 24 1 0.6978 -4.9796 1.4919 25 1 -0.8217 -4.0688 1.6371 26 1 -0.7033 -5.6540 -0.3555 27 1 -1.0742 -3.9588 -0.7676 28 1 0.7032 -5.0119 -2.2384 29 1 1.7423 -5.1336 -0.7941 30 1 0.6106 -2.6053 -2.0644 31 1 2.3214 -3.0682 -1.9137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306510716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:20 Heat of formation + Delta-G solvation = -44.472055 kcal Electronic energy + Delta-G solvation = -14097.099526 eV Core-core repulsion = 11763.762442 eV Total energy + Delta-G solvation = -2333.337084 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00471 -38.59475 -36.76959 -34.22339 -32.15313 -31.64809 -28.25247 -27.07757 -24.30136 -23.60936 -21.25172 -19.22194 -18.85995 -17.74169 -17.58733 -16.27663 -15.98609 -15.45596 -14.74609 -14.64482 -14.58655 -14.47161 -14.01165 -13.55849 -13.41260 -13.25021 -13.18811 -12.75383 -12.29417 -11.88286 -11.70437 -11.60739 -11.27283 -11.08181 -10.41076 -9.83675 -9.74940 -8.56633 -6.26055 0.97906 1.16079 1.28665 1.42299 1.82878 2.13964 2.74806 2.86080 3.72452 3.86416 4.09177 4.24156 4.31818 4.38144 4.45436 4.52937 4.64476 4.71862 4.75598 4.97062 5.06026 5.08218 5.18726 5.32115 5.46748 5.52978 5.58185 5.86804 5.96847 6.49588 6.84034 7.19279 7.76552 8.60574 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044195 B = 0.010309 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.396950 B = 2715.418469 C = 2891.104948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.476 5.476 3 C -0.346 4.346 4 H 0.039 0.961 5 C 0.011 3.989 6 N -0.912 5.912 7 Si 0.957 3.043 8 H -0.231 1.231 9 H -0.284 1.284 10 H -0.260 1.260 11 C 0.489 3.511 12 O -0.624 6.624 13 C -0.155 4.155 14 C -0.112 4.112 15 C -0.083 4.083 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.073 4.073 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.283 0.717 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 -15.736 -2.119 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.197 5.197 3 C -0.474 4.474 4 H 0.057 0.943 5 C -0.191 4.191 6 N -0.549 5.549 7 Si 0.779 3.221 8 H -0.156 1.156 9 H -0.211 1.211 10 H -0.184 1.184 11 C 0.280 3.720 12 O -0.510 6.510 13 C -0.158 4.158 14 C -0.132 4.132 15 C -0.120 4.120 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.111 4.111 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.108 0.892 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.802 -15.483 -2.097 19.581 hybrid contribution 0.570 1.013 -0.210 1.182 sum -11.231 -14.470 -2.308 18.462 Atomic orbital electron populations 1.22216 0.80018 1.02711 1.03085 1.43755 1.06106 1.04413 1.65416 1.18660 1.12120 0.89325 1.27311 0.94317 1.26310 0.99785 0.93769 0.99243 1.69816 1.45845 0.99896 1.39299 0.85751 0.79492 0.78893 0.77946 1.15560 1.21096 1.18372 1.19633 0.87232 0.85735 0.79409 1.90612 1.16801 1.88285 1.55338 1.20790 1.01154 0.94807 0.99048 1.22773 0.96065 0.98670 0.95659 1.20567 0.99727 0.92727 0.98975 1.21594 0.97072 1.02923 0.93845 1.21531 0.98698 0.93041 1.01545 1.20327 1.01490 0.97311 0.91957 0.91084 0.91946 0.89242 0.90779 0.89011 0.89384 0.88373 0.88766 0.91194 0.89352 0.91885 0.90184 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.41 8.49 127.77 1.09 3.50 16 2 N -0.48 -24.72 2.53 -663.20 -1.68 -26.40 16 3 C -0.35 -21.53 9.35 84.11 0.79 -20.75 16 4 H 0.04 2.82 7.93 -2.91 -0.02 2.80 16 5 C 0.01 0.66 5.32 84.96 0.45 1.11 16 6 N -0.91 -55.76 13.95 21.68 0.30 -55.45 16 7 Si 0.96 42.65 25.09 68.60 1.72 44.38 16 8 H -0.23 -8.77 6.51 99.48 0.65 -8.12 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 C 0.49 25.10 6.76 86.52 0.58 25.69 16 12 O -0.62 -38.72 16.99 -4.20 -0.07 -38.79 16 13 C -0.15 -5.72 3.86 -18.44 -0.07 -5.79 16 14 C -0.11 -3.36 9.14 24.83 0.23 -3.13 16 15 C -0.08 -1.58 6.11 29.66 0.18 -1.40 16 16 C -0.12 -1.92 5.99 30.61 0.18 -1.73 16 17 C -0.11 -2.28 5.97 30.61 0.18 -2.10 16 18 C -0.07 -2.23 5.80 29.66 0.17 -2.06 16 19 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 20 H 0.06 2.50 3.53 -2.39 -0.01 2.49 16 21 H 0.09 2.88 7.02 -2.39 -0.02 2.86 16 22 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 23 H 0.09 2.97 7.95 -2.91 -0.02 2.94 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.30 254.05 5.10 -73.20 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.05 Total: 9.73 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.78 Total: -6.66 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.37 Total: -81.85 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.07 Total: -38.79 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.72 Total: 44.38 kcal Total: -78.30 5.10 -73.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306510716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.728 kcal (2) G-P(sol) polarization free energy of solvation -78.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds