Wall clock time and date at job start Sun Mar 29 2020 21:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99859 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99741 * 359.97438 * 11 10 9 13 13 C 1.50691 * 119.99859 * 180.02562 * 11 10 9 14 14 H 1.08993 * 109.64724 * 59.57752 * 13 11 10 15 15 C 1.53029 * 109.64285 * 298.93897 * 13 11 10 16 16 C 1.50066 * 110.15116 * 190.88279 * 15 13 11 17 17 C 1.29442 * 124.07475 * 17.13127 * 16 15 13 18 18 C 1.50074 * 124.07447 * 359.52811 * 17 16 15 19 19 C 1.53023 * 110.14764 * 17.13862 * 18 17 16 20 20 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 22 22 H 1.09001 * 109.46881 * 60.00168 * 9 7 2 23 23 H 0.96999 * 119.99973 * 0.02562 * 10 9 7 24 24 H 1.09000 * 109.35530 * 311.09084 * 15 13 11 25 25 H 1.09001 * 109.35636 * 70.67066 * 15 13 11 26 26 H 1.07995 * 117.96044 * 197.15616 * 16 15 13 27 27 H 1.08000 * 117.96396 * 179.51108 * 17 16 15 28 28 H 1.08999 * 109.36147 * 256.92633 * 18 17 16 29 29 H 1.09001 * 109.35677 * 137.33895 * 18 17 16 30 30 H 1.09002 * 109.64005 * 190.87835 * 19 18 17 31 31 H 1.08996 * 109.64686 * 70.23859 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3250 -2.8216 0.0001 12 8 6.1131 -1.8997 -0.0004 13 6 5.8272 -4.2423 -0.0003 14 1 5.4594 -4.7608 -0.8857 15 6 5.3411 -4.9602 1.2606 16 6 6.0427 -6.2785 1.4080 17 6 7.1324 -6.5938 0.7846 18 6 7.8409 -5.6888 -0.1805 19 6 7.3612 -4.2469 -0.0002 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6808 -0.8905 22 1 3.8752 -0.6797 0.8895 23 1 3.3695 -3.3126 0.0001 24 1 5.5499 -4.3403 2.1325 25 1 4.2666 -5.1289 1.1888 26 1 5.6115 -7.0098 2.0755 27 1 7.5585 -7.5686 0.9707 28 1 7.6329 -6.0139 -1.1999 29 1 8.9147 -5.7376 0.0002 30 1 7.7295 -3.6328 -0.8220 31 1 7.7287 -3.8544 0.9480 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306513203.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:36 Heat of formation + Delta-G solvation = -44.136588 kcal Electronic energy + Delta-G solvation = -13472.045166 eV Core-core repulsion = 11138.722629 eV Total energy + Delta-G solvation = -2333.322537 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.66658 -37.36742 -34.30609 -32.41047 -31.20588 -30.72737 -27.81607 -23.92694 -22.94902 -21.52519 -19.72531 -17.88211 -17.41270 -16.33535 -15.48004 -15.15558 -14.51944 -14.15296 -13.70392 -13.55789 -13.13349 -12.80620 -12.51063 -12.38792 -12.12301 -11.81877 -11.05676 -10.90230 -10.76750 -10.66079 -10.29891 -9.96363 -9.48768 -9.08031 -9.03436 -8.77386 -8.12796 -6.21306 -4.23425 2.24333 3.24260 3.27966 3.33588 3.42280 4.00486 4.33765 4.71878 4.73457 5.00211 5.14101 5.25765 5.29478 5.42661 5.52574 5.55079 5.74004 5.85895 5.95987 6.03608 6.25274 6.38624 6.61137 6.82442 6.89841 7.08145 7.24621 7.40665 8.14637 8.53585 8.75746 8.96066 9.39165 10.90690 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061598 B = 0.006764 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.452912 B = 4138.366524 C = 4466.512857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.705 5.705 11 C 0.504 3.496 12 O -0.559 6.559 13 C -0.108 4.108 14 H 0.094 0.906 15 C -0.083 4.083 16 C -0.149 4.149 17 C -0.160 4.160 18 C -0.092 4.092 19 C -0.098 4.098 20 H 0.267 0.733 21 H 0.020 0.980 22 H 0.025 0.975 23 H 0.396 0.604 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -11.729 0.967 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.353 5.353 11 C 0.289 3.711 12 O -0.438 6.438 13 C -0.129 4.129 14 H 0.113 0.887 15 C -0.121 4.121 16 C -0.167 4.167 17 C -0.178 4.178 18 C -0.129 4.129 19 C -0.136 4.136 20 H 0.077 0.923 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.230 0.770 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.027 -10.922 0.972 16.276 hybrid contribution -0.117 0.441 0.018 0.457 sum 11.910 -10.481 0.990 15.896 Atomic orbital electron populations 1.69884 1.06211 1.27410 1.49511 1.24799 0.94786 0.99172 0.93869 0.86815 0.80573 0.83239 0.79051 1.19851 1.20893 1.18526 1.21103 0.88555 0.95214 1.53238 0.90263 1.19490 0.95225 0.78886 0.96722 1.46210 1.05828 1.10921 1.72345 1.20510 0.83053 0.90661 0.76907 1.90636 1.55645 1.46398 1.51159 1.21390 0.97631 0.93931 0.99983 0.88740 1.20428 1.00159 0.94167 0.97322 1.22034 0.96862 0.97610 1.00216 1.22063 0.97048 0.99679 0.99058 1.20497 0.99590 0.94240 0.98536 1.21399 0.93187 0.95628 1.03412 0.92273 0.96228 0.95749 0.77026 0.90249 0.90208 0.87775 0.88141 0.90932 0.91013 0.90771 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 10 N -0.70 -14.44 5.46 -61.47 -0.34 -14.78 16 11 C 0.50 9.71 7.13 -10.99 -0.08 9.63 16 12 O -0.56 -12.88 15.91 5.56 0.09 -12.79 16 13 C -0.11 -1.53 2.58 -91.55 -0.24 -1.77 16 14 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 15 C -0.08 -1.04 5.29 -28.17 -0.15 -1.19 16 16 C -0.15 -1.61 9.80 -35.90 -0.35 -1.96 16 17 C -0.16 -1.63 9.80 -35.90 -0.35 -1.99 16 18 C -0.09 -0.95 6.12 -28.17 -0.17 -1.12 16 19 C -0.10 -1.30 4.69 -26.51 -0.12 -1.43 16 20 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 22 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 23 H 0.40 7.16 8.07 -40.82 -0.33 6.83 16 24 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 25 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 26 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.04 7.91 -51.93 -0.41 0.63 16 31 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 260.35 15.07 3.92 3.92 Total: -1.00 -31.46 260.35 -6.60 -38.06 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.45 Total: 2.12 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.92 Total: -7.62 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.44 Total: -40.62 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.46 -6.60 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513203.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.076 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds