Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99835 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09004 * 109.63976 * 299.30220 * 13 11 10 15 15 C 1.53022 * 109.64305 * 59.71945 * 13 11 10 16 16 C 1.50062 * 110.14635 * 169.11908 * 15 13 11 17 17 C 1.29444 * 124.07587 * 342.87358 * 16 15 13 18 18 C 1.50062 * 124.07700 * 0.44349 * 17 16 15 19 19 C 1.53014 * 110.15296 * 342.90936 * 18 17 16 20 20 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 22 22 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 23 23 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 24 24 H 1.08997 * 109.35724 * 289.33099 * 15 13 11 25 25 H 1.09002 * 109.35546 * 48.91268 * 15 13 11 26 26 H 1.08003 * 117.96605 * 162.89057 * 16 15 13 27 27 H 1.08004 * 117.95849 * 180.46575 * 17 16 15 28 28 H 1.08999 * 109.35912 * 103.10029 * 18 17 16 29 29 H 1.09000 * 109.35836 * 222.82344 * 18 17 16 30 30 H 1.09000 * 109.62334 * 289.72360 * 19 18 17 31 31 H 1.09005 * 109.64679 * 169.10182 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.3573 -5.9820 -0.8860 15 6 3.6135 -5.9460 1.2550 16 6 4.4062 -7.2103 1.4133 17 6 4.1266 -8.3218 0.8116 18 6 2.9764 -8.4987 -0.1359 19 6 1.9701 -7.3592 0.0379 20 1 -0.4849 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 3.1566 -3.4354 0.0002 24 1 4.2958 -5.1012 1.1606 25 1 2.9832 -5.8024 2.1326 26 1 5.2631 -7.1920 2.0705 27 1 4.7604 -9.1749 1.0036 28 1 3.3488 -8.4983 -1.1603 29 1 2.4826 -9.4486 0.0687 30 1 1.4584 -7.4654 0.9944 31 1 1.2438 -7.3845 -0.7745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306513204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = -47.827044 kcal Electronic energy + Delta-G solvation = -13429.427251 eV Core-core repulsion = 11095.944684 eV Total energy + Delta-G solvation = -2333.482567 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.54628 -37.25688 -34.17665 -32.38315 -31.09311 -30.65457 -27.18475 -23.91875 -23.01437 -21.76370 -19.52340 -17.82779 -17.29275 -16.03095 -15.37287 -15.05850 -14.46671 -14.12106 -13.72249 -13.49092 -13.02001 -12.68309 -12.34454 -12.16718 -11.89847 -11.56406 -10.99827 -10.89071 -10.81460 -10.62534 -10.31187 -10.22047 -9.38256 -9.00068 -8.90630 -8.72179 -7.84862 -6.15696 -4.22565 2.27542 3.24710 3.30761 3.33242 3.41015 4.11506 4.38134 4.77657 4.79443 5.07321 5.20372 5.31266 5.33659 5.50684 5.58971 5.60829 5.79706 5.90315 6.01202 6.10776 6.31699 6.45582 6.65288 6.93083 7.33130 7.47445 7.53724 7.68412 7.98653 8.66277 8.79898 9.14255 9.44313 10.94588 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061089 B = 0.006346 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.237169 B = 4411.275266 C = 4756.995640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.712 5.712 11 C 0.501 3.499 12 O -0.557 6.557 13 C -0.108 4.108 14 H 0.092 0.908 15 C -0.083 4.083 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.092 4.092 19 C -0.098 4.098 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -12.771 0.972 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.360 5.360 11 C 0.286 3.714 12 O -0.436 6.436 13 C -0.130 4.130 14 H 0.110 0.890 15 C -0.120 4.120 16 C -0.168 4.168 17 C -0.178 4.178 18 C -0.129 4.129 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.222 0.778 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.172 -12.762 0.980 15.186 hybrid contribution 0.985 1.059 0.034 1.446 sum 9.156 -11.703 1.014 14.894 Atomic orbital electron populations 1.69979 1.06121 1.27272 1.48967 1.24957 0.94908 0.99450 0.94715 0.86416 0.79619 0.82661 0.78217 1.20463 1.21004 1.19751 1.21235 0.93249 0.90497 1.53130 0.91927 1.19097 0.88382 0.82078 0.97681 1.46480 1.11030 1.06221 1.72264 1.20450 0.89333 0.84356 0.77258 1.90645 1.16965 1.84963 1.51041 1.21399 0.97014 0.94778 0.99807 0.88957 1.20422 0.97584 0.96417 0.97606 1.22041 0.99764 0.94728 1.00243 1.22064 0.98919 0.97626 0.99212 1.20498 0.94749 0.99014 0.98607 1.21390 0.96981 0.91817 1.03436 0.92463 0.95618 0.95580 0.77756 0.90380 0.90261 0.87867 0.88198 0.90964 0.91037 0.91296 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 10 N -0.71 -15.21 5.45 -61.47 -0.34 -15.55 16 11 C 0.50 10.19 7.14 -10.98 -0.08 10.11 16 12 O -0.56 -13.65 15.90 5.55 0.09 -13.57 16 13 C -0.11 -1.61 2.58 -91.56 -0.24 -1.85 16 14 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 15 C -0.08 -1.07 5.26 -28.18 -0.15 -1.22 16 16 C -0.15 -1.66 9.80 -35.90 -0.35 -2.01 16 17 C -0.16 -1.69 9.80 -35.90 -0.35 -2.04 16 18 C -0.09 -0.99 6.12 -28.18 -0.17 -1.16 16 19 C -0.10 -1.37 4.69 -26.53 -0.12 -1.50 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.39 7.16 7.98 -40.82 -0.33 6.83 16 24 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 25 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 26 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 31 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 LS Contribution 263.76 15.07 3.97 3.97 Total: -1.00 -31.54 263.76 -6.95 -38.49 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.48 Total: 2.83 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.91 Total: -6.52 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.40 Total: -41.12 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.54 -6.95 -38.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.337 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds