Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48497 * 109.46950 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.47027 * 149.99835 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09004 * 109.63976 * 299.30220 * 13 11 10 15 15 C 1.53022 * 109.64305 * 59.71945 * 13 11 10 16 16 C 1.50062 * 110.14635 * 169.11908 * 15 13 11 17 17 C 1.29444 * 124.07587 * 342.87358 * 16 15 13 18 18 C 1.50062 * 124.07700 * 0.44349 * 17 16 15 19 19 C 1.53014 * 110.15296 * 342.90936 * 18 17 16 20 20 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 22 22 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 23 23 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 24 24 H 1.08997 * 109.35724 * 289.33099 * 15 13 11 25 25 H 1.09002 * 109.35546 * 48.91268 * 15 13 11 26 26 H 1.08003 * 117.96605 * 162.89057 * 16 15 13 27 27 H 1.08004 * 117.95849 * 180.46575 * 17 16 15 28 28 H 1.08999 * 109.35912 * 103.10029 * 18 17 16 29 29 H 1.09000 * 109.35836 * 222.82344 * 18 17 16 30 30 H 1.09000 * 109.62334 * 289.72360 * 19 18 17 31 31 H 1.09005 * 109.64679 * 169.10182 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.3573 -5.9820 -0.8860 15 6 3.6135 -5.9460 1.2550 16 6 4.4062 -7.2103 1.4133 17 6 4.1266 -8.3218 0.8116 18 6 2.9764 -8.4987 -0.1359 19 6 1.9701 -7.3592 0.0379 20 1 -0.4849 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 3.1566 -3.4354 0.0002 24 1 4.2958 -5.1012 1.1606 25 1 2.9832 -5.8024 2.1326 26 1 5.2631 -7.1920 2.0705 27 1 4.7604 -9.1749 1.0036 28 1 3.3488 -8.4983 -1.1603 29 1 2.4826 -9.4486 0.0687 30 1 1.4584 -7.4654 0.9944 31 1 1.2438 -7.3845 -0.7745 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306513204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = -69.144711 kcal Electronic energy + Delta-G solvation = -13430.351655 eV Core-core repulsion = 11095.944684 eV Total energy + Delta-G solvation = -2334.406970 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04892 -38.54080 -36.17245 -34.39733 -32.27465 -31.66138 -29.19777 -25.47724 -24.31503 -23.27410 -21.22713 -19.01147 -18.81275 -17.70334 -17.07611 -16.61417 -16.11949 -15.74786 -15.01672 -14.64928 -14.28372 -14.18404 -13.98976 -13.77445 -13.15541 -13.11425 -12.90432 -12.70940 -12.23646 -11.94994 -11.69700 -11.48744 -11.27004 -10.81264 -10.60048 -9.85248 -9.82642 -8.30028 -6.47056 1.42889 1.45511 1.46270 1.56832 1.74267 2.32008 2.59023 3.04839 3.65963 3.78019 3.91300 4.29469 4.31675 4.43924 4.48288 4.64581 4.76678 4.94972 5.02874 5.07854 5.14984 5.21793 5.28691 5.36666 5.48110 5.68335 5.81625 5.83775 6.09908 6.63943 6.89344 7.22346 7.47656 8.82373 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061089 B = 0.006346 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.237169 B = 4411.275266 C = 4756.995640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.705 5.705 11 C 0.497 3.503 12 O -0.605 6.605 13 C -0.096 4.096 14 H 0.116 0.884 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.155 4.155 18 C -0.087 4.087 19 C -0.100 4.100 20 H 0.269 0.731 21 H -0.014 1.014 22 H -0.014 1.014 23 H 0.408 0.592 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.227 -13.256 0.963 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.355 5.355 11 C 0.285 3.715 12 O -0.487 6.487 13 C -0.117 4.117 14 H 0.134 0.866 15 C -0.118 4.118 16 C -0.178 4.178 17 C -0.173 4.173 18 C -0.124 4.124 19 C -0.138 4.138 20 H 0.078 0.922 21 H 0.004 0.996 22 H 0.004 0.996 23 H 0.244 0.756 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.242 -13.279 0.971 17.426 hybrid contribution -0.037 1.139 0.027 1.140 sum 11.205 -12.141 0.998 16.551 Atomic orbital electron populations 1.70145 1.08350 1.28598 1.49975 1.26093 0.95776 1.03988 0.93777 0.85132 0.78485 0.76816 0.78630 1.19554 1.20943 1.17834 1.21619 0.94312 0.90536 1.52943 0.89767 1.18552 0.88786 0.84536 0.93969 1.46230 1.11117 1.05578 1.72544 1.21543 0.89746 0.85076 0.75184 1.90618 1.19613 1.85645 1.52805 1.21410 0.96023 0.92246 1.02068 0.86565 1.20411 0.97337 0.98551 0.95537 1.22054 1.00430 0.93753 1.01519 1.22280 0.98566 0.98219 0.98267 1.20506 0.94118 0.97991 0.99783 1.21399 0.97616 0.92813 1.01964 0.92230 0.99613 0.99591 0.75641 0.89177 0.92016 0.85753 0.85586 0.89478 0.89388 0.92950 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.56 -30.63 9.28 25.60 0.24 -30.39 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.26 14.87 5.43 85.63 0.46 15.33 16 10 N -0.71 -30.68 5.45 -466.79 -2.54 -33.23 16 11 C 0.50 20.70 7.14 87.66 0.63 21.32 16 12 O -0.60 -31.19 15.90 -3.04 -0.05 -31.24 16 13 C -0.10 -2.77 2.58 -11.40 -0.03 -2.80 16 14 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 15 C -0.08 -1.96 5.26 29.66 0.16 -1.80 16 16 C -0.16 -3.03 9.80 27.03 0.27 -2.77 16 17 C -0.16 -2.69 9.80 27.03 0.27 -2.43 16 18 C -0.09 -1.63 6.12 29.65 0.18 -1.45 16 19 C -0.10 -2.72 4.69 30.73 0.14 -2.58 16 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 22 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 23 H 0.41 14.64 7.98 -92.71 -0.74 13.90 16 24 H 0.09 1.94 7.88 -2.39 -0.02 1.92 16 25 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 26 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 27 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.06 1.76 7.89 -2.38 -0.02 1.74 16 Total: -1.00 -71.02 263.76 2.86 -68.16 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.37 Total: 15.31 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 2.77 Total: -6.92 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -2.26 Total: -89.81 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.02 2.86 -68.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds