Wall clock time and date at job start Sun Mar 29 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47399 * 300.00512 * 3 2 1 6 6 H 1.48510 * 109.46708 * 60.00112 * 3 2 1 7 7 C 1.40048 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00352 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99590 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00283 * 180.02562 * 9 7 2 12 12 C 1.47590 * 122.01474 * 0.60665 * 11 9 7 13 13 C 1.53646 * 106.68611 * 179.15775 * 12 11 9 14 14 C 1.53060 * 108.96514 * 300.59398 * 13 12 11 15 15 C 1.52924 * 109.98802 * 60.36851 * 14 13 12 16 16 C 1.47641 * 122.01916 * 179.97438 * 11 9 7 17 17 C 1.53389 * 108.38078 * 121.78473 * 16 11 9 18 18 C 1.53073 * 109.62759 * 60.04486 * 13 12 11 19 19 H 0.96993 * 119.99929 * 359.97438 * 1 2 3 20 20 H 1.08996 * 110.01081 * 59.86365 * 12 11 9 21 21 H 1.09001 * 110.08637 * 298.49023 * 12 11 9 22 22 H 1.08994 * 109.68078 * 180.52190 * 13 12 11 23 23 H 1.08993 * 109.38246 * 300.21323 * 14 13 12 24 24 H 1.08997 * 109.29646 * 180.47450 * 14 13 12 25 25 H 1.08996 * 109.44821 * 238.55245 * 15 14 13 26 26 H 1.09001 * 109.44603 * 118.64239 * 15 14 13 27 27 H 1.09002 * 110.58686 * 0.41688 * 16 11 9 28 28 H 1.09003 * 109.45229 * 176.37131 * 17 16 11 29 29 H 1.08997 * 109.45199 * 296.31107 * 17 16 11 30 30 H 1.08999 * 109.37215 * 60.12974 * 18 13 12 31 31 H 1.08993 * 109.37893 * 179.89802 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 3.4238 -3.6997 0.0127 13 6 3.8128 -5.1860 0.0300 14 6 3.2152 -5.8421 1.2771 15 6 1.6909 -5.7222 1.2514 16 6 1.2562 -4.9516 0.0000 17 6 1.7059 -5.7387 -1.2373 18 6 3.2573 -5.8774 -1.2176 19 1 -0.4850 0.8400 0.0004 20 1 3.8065 -3.2037 0.9046 21 1 3.8234 -3.2201 -0.8809 22 1 4.8984 -5.2811 0.0497 23 1 3.6021 -5.3462 2.1673 24 1 3.4951 -6.8953 1.2992 25 1 1.3537 -5.1897 2.1406 26 1 1.2488 -6.7184 1.2360 27 1 0.1753 -4.8113 -0.0070 28 1 1.2541 -6.7306 -1.2205 29 1 1.3901 -5.2114 -2.1375 30 1 3.6734 -5.4058 -2.1078 31 1 3.5370 -6.9308 -1.2021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306572443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:16 Heat of formation + Delta-G solvation = -50.631623 kcal Electronic energy + Delta-G solvation = -14378.145342 eV Core-core repulsion = 12044.541159 eV Total energy + Delta-G solvation = -2333.604183 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69142 -36.21488 -32.54215 -31.69935 -30.92119 -30.26307 -26.29786 -24.19808 -22.20166 -21.90011 -19.72021 -17.06405 -16.42606 -15.62096 -15.30474 -14.95388 -14.54366 -13.49364 -13.05598 -12.60918 -12.16332 -11.86607 -11.78575 -11.66585 -11.59435 -11.50112 -11.07694 -11.02358 -10.61830 -10.35978 -10.20974 -9.74642 -9.71540 -9.57812 -8.82712 -7.53173 -7.06552 -6.15373 -4.59961 3.14208 3.22379 3.26878 4.11032 4.56731 4.58843 5.05618 5.11055 5.12338 5.61106 5.64636 5.72713 5.74292 5.82615 5.88429 5.93989 6.12881 6.26588 6.29168 6.42998 6.48783 6.49518 6.67577 6.68809 6.76743 6.86207 7.47153 7.65190 8.18660 8.47218 9.06303 9.53337 10.62652 10.82325 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048708 B = 0.009996 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.711012 B = 2800.569487 C = 3030.815456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.562 3.438 10 O -0.581 6.581 11 N -0.638 5.638 12 C 0.141 3.859 13 C -0.103 4.103 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.146 3.854 17 C -0.126 4.126 18 C -0.107 4.107 19 H 0.267 0.733 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -8.961 0.037 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.368 3.632 10 O -0.464 6.464 11 N -0.377 5.377 12 C 0.017 3.983 13 C -0.122 4.122 14 C -0.144 4.144 15 C -0.166 4.166 16 C 0.041 3.959 17 C -0.165 4.165 18 C -0.145 4.145 19 H 0.078 0.922 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.689 -8.815 0.035 11.066 hybrid contribution 0.601 0.803 0.017 1.003 sum 7.290 -8.013 0.052 10.832 Atomic orbital electron populations 1.70036 1.07043 1.27058 1.35611 1.25734 0.94597 1.00267 0.92660 0.86354 0.80552 0.81897 0.78190 1.18760 1.20182 1.20190 1.20988 0.93630 0.89217 1.53830 0.91258 1.18184 0.86848 0.82036 0.76154 1.90583 1.14043 1.86188 1.55536 1.48584 1.04478 1.04652 1.79968 1.21416 0.83143 0.93394 1.00386 1.21490 0.99185 0.96117 0.95372 1.21439 0.96027 0.99449 0.97491 1.21913 0.95601 0.99582 0.99470 1.20891 0.98253 0.84487 0.92301 1.22418 0.95249 0.99416 0.99390 1.21923 0.95916 0.99238 0.97373 0.92236 0.92841 0.92892 0.90927 0.92331 0.92712 0.92029 0.92322 0.88956 0.92304 0.91926 0.92326 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.39 11.83 55.55 0.66 -22.73 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.53 8.96 -35.63 -0.32 -15.85 16 8 H 0.07 1.84 6.84 -52.48 -0.36 1.48 16 9 C 0.56 16.43 7.68 -12.99 -0.10 16.33 16 10 O -0.58 -19.20 14.60 5.20 0.08 -19.13 16 11 N -0.64 -14.93 2.82 -165.25 -0.47 -15.40 16 12 C 0.14 2.72 4.83 -3.11 -0.02 2.70 16 13 C -0.10 -1.55 3.27 -90.22 -0.29 -1.85 16 14 C -0.11 -1.55 5.65 -26.74 -0.15 -1.70 16 15 C -0.13 -2.12 5.84 -26.64 -0.16 -2.28 16 16 C 0.15 2.93 3.50 -66.97 -0.23 2.69 16 17 C -0.13 -2.10 5.99 -25.05 -0.15 -2.25 16 18 C -0.11 -1.55 5.82 -25.21 -0.15 -1.69 16 19 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 20 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 21 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.09 2.10 7.19 -51.93 -0.37 1.73 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 248.93 15.07 3.75 3.75 Total: -1.00 -33.64 248.93 -7.18 -40.82 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.51 Total: -1.19 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.66 Total: -1.53 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.19 Total: -38.13 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.13 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.64 -7.18 -40.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.815 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds