Wall clock time and date at job start Sun Mar 29 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47399 * 300.00512 * 3 2 1 6 6 H 1.48510 * 109.46708 * 60.00112 * 3 2 1 7 7 C 1.40048 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00352 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99590 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00283 * 180.02562 * 9 7 2 12 12 C 1.47590 * 122.01474 * 0.60665 * 11 9 7 13 13 C 1.53646 * 106.68611 * 179.15775 * 12 11 9 14 14 C 1.53060 * 108.96514 * 300.59398 * 13 12 11 15 15 C 1.52924 * 109.98802 * 60.36851 * 14 13 12 16 16 C 1.47641 * 122.01916 * 179.97438 * 11 9 7 17 17 C 1.53389 * 108.38078 * 121.78473 * 16 11 9 18 18 C 1.53073 * 109.62759 * 60.04486 * 13 12 11 19 19 H 0.96993 * 119.99929 * 359.97438 * 1 2 3 20 20 H 1.08996 * 110.01081 * 59.86365 * 12 11 9 21 21 H 1.09001 * 110.08637 * 298.49023 * 12 11 9 22 22 H 1.08994 * 109.68078 * 180.52190 * 13 12 11 23 23 H 1.08993 * 109.38246 * 300.21323 * 14 13 12 24 24 H 1.08997 * 109.29646 * 180.47450 * 14 13 12 25 25 H 1.08996 * 109.44821 * 238.55245 * 15 14 13 26 26 H 1.09001 * 109.44603 * 118.64239 * 15 14 13 27 27 H 1.09002 * 110.58686 * 0.41688 * 16 11 9 28 28 H 1.09003 * 109.45229 * 176.37131 * 17 16 11 29 29 H 1.08997 * 109.45199 * 296.31107 * 17 16 11 30 30 H 1.08999 * 109.37215 * 60.12974 * 18 13 12 31 31 H 1.08993 * 109.37893 * 179.89802 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 3.4238 -3.6997 0.0127 13 6 3.8128 -5.1860 0.0300 14 6 3.2152 -5.8421 1.2771 15 6 1.6909 -5.7222 1.2514 16 6 1.2562 -4.9516 0.0000 17 6 1.7059 -5.7387 -1.2373 18 6 3.2573 -5.8774 -1.2176 19 1 -0.4850 0.8400 0.0004 20 1 3.8065 -3.2037 0.9046 21 1 3.8234 -3.2201 -0.8809 22 1 4.8984 -5.2811 0.0497 23 1 3.6021 -5.3462 2.1673 24 1 3.4951 -6.8953 1.2992 25 1 1.3537 -5.1897 2.1406 26 1 1.2488 -6.7184 1.2360 27 1 0.1753 -4.8113 -0.0070 28 1 1.2541 -6.7306 -1.2205 29 1 1.3901 -5.2114 -2.1375 30 1 3.6734 -5.4058 -2.1078 31 1 3.5370 -6.9308 -1.2021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:16 Heat of formation + Delta-G solvation = -73.609235 kcal Electronic energy + Delta-G solvation = -14379.141726 eV Core-core repulsion = 12044.541159 eV Total energy + Delta-G solvation = -2334.600567 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21545 -38.30456 -34.70203 -33.55050 -32.38051 -31.50041 -28.44724 -25.85049 -23.46353 -23.43183 -21.59734 -18.97169 -17.93942 -17.55283 -16.85053 -16.42550 -16.34883 -15.26222 -14.72101 -14.28132 -13.99083 -13.54768 -13.24219 -13.13878 -12.93360 -12.87348 -12.80363 -12.74999 -12.47867 -12.07709 -11.98686 -11.11059 -11.05548 -10.97101 -10.95029 -9.78405 -8.96576 -8.30018 -6.85866 1.36741 1.37314 1.55316 2.22012 2.44379 2.83935 3.55846 3.77754 3.85863 3.91447 4.21574 4.37717 4.48137 4.49792 4.52193 4.65495 4.78610 4.90978 5.05093 5.08934 5.10295 5.24906 5.27825 5.31032 5.39211 5.42032 5.49345 5.81265 6.11156 6.49014 6.85597 7.47243 8.47329 8.67175 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048708 B = 0.009996 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.711012 B = 2800.569487 C = 3030.815456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 0.997 3.003 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.638 6.638 11 N -0.641 5.641 12 C 0.131 3.869 13 C -0.095 4.095 14 C -0.102 4.102 15 C -0.121 4.121 16 C 0.131 3.869 17 C -0.122 4.122 18 C -0.101 4.101 19 H 0.274 0.726 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.111 0.889 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -10.166 0.040 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.603 4.603 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.526 6.526 11 N -0.378 5.378 12 C 0.008 3.992 13 C -0.113 4.113 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.027 3.973 17 C -0.160 4.160 18 C -0.138 4.138 19 H 0.084 0.916 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.129 0.871 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.818 -10.081 0.038 14.073 hybrid contribution -0.405 1.110 0.016 1.182 sum 9.414 -8.971 0.054 13.004 Atomic orbital electron populations 1.70213 1.09594 1.28790 1.36749 1.27034 0.95539 1.05035 0.91223 0.84987 0.79410 0.75361 0.78633 1.16876 1.19211 1.19226 1.21474 0.94552 0.89949 1.54327 0.89625 1.18630 0.86542 0.84247 0.76040 1.90521 1.16362 1.87612 1.58083 1.48463 1.06554 1.04457 1.78359 1.21684 0.80245 0.97361 0.99865 1.21532 1.01470 0.92347 0.95988 1.21464 0.93437 1.01897 0.97163 1.21867 0.98106 1.00003 0.96007 1.21134 0.95803 0.84047 0.96340 1.22373 0.97910 0.99779 0.95945 1.21949 0.93176 1.01658 0.97041 0.91644 0.93406 0.93374 0.87077 0.92400 0.88676 0.94807 0.89208 0.93534 0.89219 0.94611 0.92243 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.32 11.83 21.84 0.26 -52.06 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 1.00 42.28 29.56 68.60 2.03 44.31 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.57 -33.61 8.96 24.83 0.22 -33.38 16 8 H 0.09 4.60 6.84 -2.91 -0.02 4.58 16 9 C 0.54 33.29 7.68 86.36 0.66 33.95 16 10 O -0.64 -45.24 14.60 -4.30 -0.06 -45.30 16 11 N -0.64 -30.99 2.82 -794.96 -2.24 -33.24 16 12 C 0.13 4.96 4.83 86.39 0.42 5.38 16 13 C -0.09 -2.50 3.27 -10.53 -0.03 -2.53 16 14 C -0.10 -2.57 5.65 30.59 0.17 -2.40 16 15 C -0.12 -3.90 5.84 30.66 0.18 -3.72 16 16 C 0.13 5.38 3.50 44.99 0.16 5.53 16 17 C -0.12 -3.88 5.99 31.68 0.19 -3.69 16 18 C -0.10 -2.50 5.82 31.58 0.18 -2.32 16 19 H 0.27 15.66 8.29 -92.71 -0.77 14.89 16 20 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 21 H 0.05 1.84 8.09 -2.39 -0.02 1.82 16 22 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 2.29 7.19 -2.39 -0.02 2.27 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -79.39 248.93 3.70 -75.69 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.10 Total: 11.79 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 2.62 Total: -1.19 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.99 Total: -85.30 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.06 Total: -45.30 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -79.39 3.70 -75.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.082 kcal (2) G-P(sol) polarization free energy of solvation -79.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds