Wall clock time and date at job start Sun Mar 29 2020 21:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48504 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00163 * 3 2 1 6 6 H 1.48501 * 109.46878 * 60.00326 * 3 2 1 7 7 C 1.39073 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99956 * 179.97438 * 7 2 1 9 9 N 1.36813 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99755 * 180.02562 * 9 7 2 11 11 O 1.21660 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.46955 * 119.99919 * 179.97438 * 10 9 7 13 13 C 1.31692 * 119.85648 * 179.97438 * 12 10 9 14 14 C 1.51416 * 120.28573 * 180.02562 * 13 12 10 15 15 C 1.53036 * 108.56941 * 71.56989 * 14 13 12 16 16 C 1.51785 * 110.80707 * 274.28451 * 15 14 13 17 17 C 1.51771 * 113.85418 * 66.97017 * 16 15 14 18 18 C 1.51419 * 119.85399 * 359.97438 * 12 10 9 19 19 H 0.97004 * 119.99979 * 359.97438 * 1 2 3 20 20 H 0.96995 * 120.00203 * 359.97438 * 9 7 2 21 21 H 1.07992 * 119.85672 * 0.27058 * 13 12 10 22 22 H 1.09004 * 109.61719 * 191.28996 * 14 13 12 23 23 H 1.08998 * 109.61835 * 311.65670 * 14 13 12 24 24 H 1.08994 * 109.21465 * 34.62537 * 15 14 13 25 25 H 1.09000 * 109.20591 * 153.99736 * 15 14 13 26 26 H 1.09006 * 108.60242 * 188.10565 * 16 15 14 27 27 H 1.08998 * 108.60795 * 305.97933 * 16 15 14 28 28 H 1.08993 * 109.21005 * 53.37859 * 17 16 15 29 29 H 1.09004 * 109.20227 * 172.72985 * 17 16 15 30 30 H 1.08997 * 109.62190 * 348.70176 * 18 12 10 31 31 H 1.09003 * 109.61610 * 228.15848 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8887 2.3964 1.2126 7 6 2.0089 -1.2044 -0.0005 8 1 3.0889 -1.2044 -0.0010 9 7 1.3248 -2.3892 -0.0016 10 6 1.9988 -3.5564 -0.0016 11 8 3.2154 -3.5565 -0.0011 12 6 1.2641 -4.8291 -0.0022 13 6 1.9254 -5.9679 -0.0027 14 6 1.1782 -7.2849 -0.0039 15 6 0.5394 -7.4815 -1.3805 16 6 -0.8131 -6.7960 -1.4502 17 6 -0.7381 -5.2818 -1.3793 18 6 -0.2501 -4.8253 -0.0022 19 1 -0.4850 0.8401 0.0004 20 1 0.3549 -2.3893 -0.0016 21 1 3.0053 -5.9625 0.0017 22 1 1.8733 -8.1002 0.1969 23 1 0.4038 -7.2670 0.7630 24 1 1.1944 -7.0608 -2.1433 25 1 0.4102 -8.5477 -1.5669 26 1 -1.2976 -7.0770 -2.3853 27 1 -1.4260 -7.1510 -0.6217 28 1 -0.0484 -4.9209 -2.1422 29 1 -1.7280 -4.8648 -1.5647 30 1 -0.6136 -3.8177 0.1994 31 1 -0.6178 -5.5097 0.7625 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306575318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:04 Heat of formation + Delta-G solvation = -46.548204 kcal Electronic energy + Delta-G solvation = -13780.162082 eV Core-core repulsion = 11446.734970 eV Total energy + Delta-G solvation = -2333.427112 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98840 -37.11533 -34.04888 -32.06994 -31.78271 -30.88844 -25.68644 -24.86904 -23.49221 -20.55383 -20.01149 -18.13458 -17.06742 -16.30653 -15.15142 -14.60440 -14.24291 -13.85656 -13.57993 -13.32256 -13.05646 -12.69608 -12.42527 -11.66878 -11.50604 -11.27095 -11.12665 -10.73977 -10.50407 -10.40306 -10.34051 -10.25341 -10.03910 -9.57417 -8.40378 -8.33953 -7.98766 -6.47338 -3.82014 2.26100 3.19005 3.25214 3.33103 4.15877 4.39068 4.82722 5.01354 5.07977 5.18068 5.34170 5.39781 5.51754 5.69062 5.74687 5.85635 5.92868 6.03912 6.10267 6.22064 6.31092 6.41735 6.43289 6.46645 6.68226 7.12150 7.34454 7.51103 8.07102 8.61173 9.15564 9.54305 10.09395 10.70235 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054226 B = 0.007947 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.235682 B = 3522.557843 C = 3894.875723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.297 4.297 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.466 3.534 11 O -0.604 6.604 12 C -0.140 4.140 13 C -0.123 4.123 14 C -0.087 4.087 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.085 4.085 19 H 0.273 0.727 20 H 0.394 0.606 21 H 0.119 0.881 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 -10.633 -1.435 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.427 4.427 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.255 3.745 11 O -0.491 6.491 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.124 4.124 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.123 4.123 19 H 0.083 0.917 20 H 0.230 0.770 21 H 0.137 0.863 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.569 -10.416 -1.444 11.105 hybrid contribution -0.194 0.945 0.007 0.965 sum -3.763 -9.471 -1.437 10.292 Atomic orbital electron populations 1.69596 1.06063 1.28318 1.49587 1.25339 0.95652 0.99910 0.97118 0.85769 0.79784 0.80858 0.77788 1.19099 1.20634 1.20621 1.19845 0.93654 0.82405 1.46836 0.87678 1.41926 1.09487 1.04752 1.62226 1.17914 0.87491 0.83875 0.85250 1.90596 1.13576 1.87378 1.57588 1.21422 0.95172 0.94521 1.03236 1.22968 1.00064 0.92791 0.98578 1.20810 0.98972 0.95327 0.97323 1.21270 0.96805 0.99631 0.97414 1.21125 0.97065 0.95711 1.01386 1.21269 1.01239 0.95167 0.97473 1.20808 0.92158 1.02072 0.97257 0.91712 0.77045 0.86336 0.91659 0.91158 0.91723 0.92215 0.92650 0.92494 0.91659 0.91770 0.90863 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 2 C 0.02 0.60 5.50 -17.45 -0.10 0.51 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.53 9.68 -15.02 -0.15 -8.67 16 8 H 0.11 3.15 7.15 -52.48 -0.38 2.78 16 9 N -0.55 -14.62 5.23 -12.10 -0.06 -14.68 16 10 C 0.47 11.95 7.69 -12.73 -0.10 11.86 16 11 O -0.60 -17.58 15.75 5.22 0.08 -17.50 16 12 C -0.14 -2.80 5.10 -102.62 -0.52 -3.32 16 13 C -0.12 -2.18 8.93 -35.83 -0.32 -2.50 16 14 C -0.09 -1.15 5.61 -27.51 -0.15 -1.30 16 15 C -0.11 -1.37 5.66 -27.33 -0.15 -1.53 16 16 C -0.12 -1.38 5.27 -27.97 -0.15 -1.52 16 17 C -0.11 -1.65 5.66 -27.32 -0.15 -1.80 16 18 C -0.09 -1.42 5.37 -27.49 -0.15 -1.56 16 19 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 20 H 0.39 9.96 5.67 -40.82 -0.23 9.73 16 21 H 0.12 2.29 7.44 -52.49 -0.39 1.90 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.88 6.76 -51.93 -0.35 0.53 16 24 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 28 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 31 H 0.07 1.03 6.75 -51.93 -0.35 0.68 16 LS Contribution 253.60 15.07 3.82 3.82 Total: -1.00 -31.04 253.60 -6.46 -37.50 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.06 Total: 8.33 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.94 Total: -9.85 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.66 Total: -38.42 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.08 Total: -17.50 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.04 -6.46 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306575318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.044 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds