Wall clock time and date at job start Sun Mar 29 2020 21:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48504 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00163 * 3 2 1 6 6 H 1.48501 * 109.46878 * 60.00326 * 3 2 1 7 7 C 1.39073 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99956 * 179.97438 * 7 2 1 9 9 N 1.36813 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99755 * 180.02562 * 9 7 2 11 11 O 1.21660 * 120.00488 * 359.97438 * 10 9 7 12 12 C 1.46955 * 119.99919 * 179.97438 * 10 9 7 13 13 C 1.31692 * 119.85648 * 179.97438 * 12 10 9 14 14 C 1.51416 * 120.28573 * 180.02562 * 13 12 10 15 15 C 1.53036 * 108.56941 * 71.56989 * 14 13 12 16 16 C 1.51785 * 110.80707 * 274.28451 * 15 14 13 17 17 C 1.51771 * 113.85418 * 66.97017 * 16 15 14 18 18 C 1.51419 * 119.85399 * 359.97438 * 12 10 9 19 19 H 0.97004 * 119.99979 * 359.97438 * 1 2 3 20 20 H 0.96995 * 120.00203 * 359.97438 * 9 7 2 21 21 H 1.07992 * 119.85672 * 0.27058 * 13 12 10 22 22 H 1.09004 * 109.61719 * 191.28996 * 14 13 12 23 23 H 1.08998 * 109.61835 * 311.65670 * 14 13 12 24 24 H 1.08994 * 109.21465 * 34.62537 * 15 14 13 25 25 H 1.09000 * 109.20591 * 153.99736 * 15 14 13 26 26 H 1.09006 * 108.60242 * 188.10565 * 16 15 14 27 27 H 1.08998 * 108.60795 * 305.97933 * 16 15 14 28 28 H 1.08993 * 109.21005 * 53.37859 * 17 16 15 29 29 H 1.09004 * 109.20227 * 172.72985 * 17 16 15 30 30 H 1.08997 * 109.62190 * 348.70176 * 18 12 10 31 31 H 1.09003 * 109.61610 * 228.15848 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8887 2.3964 1.2126 7 6 2.0089 -1.2044 -0.0005 8 1 3.0889 -1.2044 -0.0010 9 7 1.3248 -2.3892 -0.0016 10 6 1.9988 -3.5564 -0.0016 11 8 3.2154 -3.5565 -0.0011 12 6 1.2641 -4.8291 -0.0022 13 6 1.9254 -5.9679 -0.0027 14 6 1.1782 -7.2849 -0.0039 15 6 0.5394 -7.4815 -1.3805 16 6 -0.8131 -6.7960 -1.4502 17 6 -0.7381 -5.2818 -1.3793 18 6 -0.2501 -4.8253 -0.0022 19 1 -0.4850 0.8401 0.0004 20 1 0.3549 -2.3893 -0.0016 21 1 3.0053 -5.9625 0.0017 22 1 1.8733 -8.1002 0.1969 23 1 0.4038 -7.2670 0.7630 24 1 1.1944 -7.0608 -2.1433 25 1 0.4102 -8.5477 -1.5669 26 1 -1.2976 -7.0770 -2.3853 27 1 -1.4260 -7.1510 -0.6217 28 1 -0.0484 -4.9209 -2.1422 29 1 -1.7280 -4.8648 -1.5647 30 1 -0.6136 -3.8177 0.1994 31 1 -0.6178 -5.5097 0.7625 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306575318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:04 Heat of formation + Delta-G solvation = -66.677265 kcal Electronic energy + Delta-G solvation = -13781.034944 eV Core-core repulsion = 11446.734970 eV Total energy + Delta-G solvation = -2334.299974 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69196 -38.65874 -36.14932 -33.69053 -33.19320 -32.50752 -27.53253 -26.28323 -24.86836 -22.22161 -21.13899 -20.22694 -18.71460 -17.94411 -16.99923 -16.14833 -15.65463 -15.49464 -15.41830 -14.77163 -14.43172 -13.96937 -13.84728 -13.54288 -12.99166 -12.85523 -12.59337 -12.35724 -12.14390 -11.93567 -11.61940 -11.50018 -11.48287 -11.26462 -10.40262 -10.13008 -9.82552 -8.56065 -6.01919 0.65419 1.38276 1.39869 1.53661 2.25993 2.44421 3.19197 3.24455 3.81159 4.01647 4.06489 4.20904 4.23756 4.38769 4.53720 4.65367 4.84935 4.88912 4.96605 5.02374 5.27125 5.29167 5.33076 5.33436 5.38728 5.55963 5.65163 5.78433 6.03415 6.52358 7.03150 7.46894 8.03800 8.61699 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054226 B = 0.007947 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.235682 B = 3522.557843 C = 3894.875723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.343 4.343 8 H 0.079 0.921 9 N -0.556 5.556 10 C 0.456 3.544 11 O -0.650 6.650 12 C -0.170 4.170 13 C -0.095 4.095 14 C -0.082 4.082 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.076 4.076 19 H 0.282 0.718 20 H 0.398 0.602 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 -12.027 -1.431 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.097 0.903 9 N -0.191 5.191 10 C 0.247 3.753 11 O -0.541 6.541 12 C -0.173 4.173 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.113 4.113 19 H 0.092 0.908 20 H 0.235 0.765 21 H 0.114 0.886 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.071 -11.822 -1.442 12.944 hybrid contribution 0.308 1.290 0.004 1.326 sum -4.763 -10.532 -1.437 11.648 Atomic orbital electron populations 1.69649 1.06994 1.29748 1.48862 1.26184 0.96633 1.02653 0.95623 0.84799 0.77918 0.76442 0.78708 1.19843 1.19112 1.19053 1.19803 0.92918 0.84201 1.50326 0.90336 1.41954 1.09616 1.04774 1.62771 1.18936 0.87371 0.85562 0.83420 1.90540 1.15792 1.88382 1.59416 1.21304 0.97059 0.92107 1.06830 1.23349 0.99395 0.94696 0.94145 1.20952 0.99531 0.92630 0.98827 1.21285 0.96342 1.01600 0.95729 1.21123 0.97444 0.93204 1.03290 1.21281 1.00956 0.97605 0.95165 1.20793 0.89364 1.01706 0.99463 0.90823 0.76525 0.88632 0.89314 0.89252 0.93601 0.88888 0.90882 0.90376 0.94349 0.90536 0.93044 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.17 13.05 21.68 0.28 -49.89 16 2 C -0.01 -0.55 5.50 84.97 0.47 -0.09 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.34 -20.57 9.68 84.12 0.81 -19.76 16 8 H 0.08 5.02 7.15 -2.91 -0.02 5.00 16 9 N -0.56 -31.06 5.23 -310.42 -1.63 -32.69 16 10 C 0.46 24.57 7.69 86.53 0.67 25.24 16 11 O -0.65 -40.07 15.75 -4.22 -0.07 -40.14 16 12 C -0.17 -6.86 5.10 -18.03 -0.09 -6.95 16 13 C -0.09 -3.30 8.93 25.23 0.23 -3.07 16 14 C -0.08 -1.88 5.61 30.09 0.17 -1.71 16 15 C -0.11 -2.28 5.66 30.21 0.17 -2.11 16 16 C -0.11 -2.26 5.27 29.79 0.16 -2.10 16 17 C -0.11 -3.07 5.66 30.21 0.17 -2.90 16 18 C -0.08 -2.44 5.37 30.10 0.16 -2.28 16 19 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 20 H 0.40 21.03 5.67 -92.71 -0.53 20.50 16 21 H 0.10 3.75 7.44 -2.91 -0.02 3.73 16 22 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.09 1.80 6.76 -2.39 -0.02 1.78 16 24 H 0.05 1.12 7.85 -2.39 -0.02 1.10 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.08 1.29 7.87 -2.39 -0.02 1.27 16 28 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.86 5.98 -2.39 -0.01 1.85 16 31 H 0.10 2.59 6.75 -2.39 -0.02 2.58 16 Total: -1.00 -70.32 253.60 4.13 -66.19 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.60 Total: 26.57 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 2.91 Total: -15.74 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.34 Total: -82.58 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.07 Total: -40.14 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.32 4.13 -66.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306575318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.483 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds