Wall clock time and date at job start Sun Mar 29 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48505 * 109.47098 * 269.99906 * 3 2 1 5 5 H 1.48500 * 109.47293 * 30.00181 * 3 2 1 6 6 H 1.48504 * 109.47145 * 150.00043 * 3 2 1 7 7 C 1.40049 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00104 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99664 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00085 * 179.97438 * 9 7 2 12 12 C 1.49296 * 127.09987 * 359.97438 * 11 9 7 13 13 C 1.56234 * 106.55190 * 188.63461 * 12 11 9 14 14 C 1.52276 * 100.74923 * 23.46215 * 13 12 11 15 15 H 1.08997 * 111.50358 * 74.11408 * 14 13 12 16 16 C 1.51230 * 122.09187 * 208.80271 * 14 13 12 17 17 C 1.55685 * 104.60852 * 141.25478 * 16 14 13 18 18 C 1.56278 * 105.93765 * 352.75090 * 17 16 14 19 19 C 1.42700 * 127.10209 * 179.97438 * 11 9 7 20 20 H 1.09003 * 108.15833 * 255.85121 * 19 11 9 21 21 H 0.96993 * 119.99934 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.05193 * 307.92319 * 12 11 9 23 23 H 1.08996 * 110.05075 * 69.35043 * 12 11 9 24 24 H 1.09002 * 111.14974 * 141.36378 * 13 12 11 25 25 H 1.09003 * 111.14908 * 265.59089 * 13 12 11 26 26 H 1.09002 * 110.41092 * 22.46968 * 16 14 13 27 27 H 1.08999 * 110.50939 * 260.08990 * 16 14 13 28 28 H 1.09006 * 110.16011 * 233.63828 * 17 16 14 29 29 H 1.09002 * 110.15914 * 111.86755 * 17 16 14 30 30 H 1.09006 * 110.97562 * 217.62826 * 18 17 16 31 31 H 1.09003 * 110.97562 * 93.85972 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6478 0.0017 12 6 3.4305 -3.8323 0.0001 13 6 3.6889 -5.3567 -0.2240 14 6 2.3930 -5.7665 -0.9107 15 1 2.3599 -5.4173 -1.9427 16 6 1.8274 -7.1640 -0.7911 17 6 0.2884 -6.9566 -0.6806 18 6 0.0711 -5.4140 -0.5555 19 6 1.3937 -4.9623 0.0032 20 1 1.4959 -5.3731 1.0077 21 1 -0.4850 0.8400 -0.0004 22 1 3.8782 -3.2545 -0.8086 23 1 3.8470 -3.5195 0.9575 24 1 4.5480 -5.5185 -0.8751 25 1 3.8133 -5.8782 0.7250 26 1 2.2103 -7.6537 0.1042 27 1 2.0692 -7.7509 -1.6772 28 1 -0.0963 -7.4630 0.2047 29 1 -0.2068 -7.3343 -1.5751 30 1 -0.7414 -5.1891 0.1354 31 1 -0.1136 -4.9656 -1.5317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306632394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:14 Heat of formation + Delta-G solvation = -33.580902 kcal Electronic energy + Delta-G solvation = -14145.883643 eV Core-core repulsion = 11813.018835 eV Total energy + Delta-G solvation = -2332.864808 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76727 -36.31651 -33.94376 -32.48376 -30.50318 -27.63885 -26.36805 -25.61495 -21.99272 -20.80291 -19.58048 -18.60185 -16.30147 -15.74030 -15.34628 -14.42276 -14.21220 -14.08234 -13.33336 -12.62775 -12.38678 -12.08442 -12.05310 -11.54568 -11.16999 -11.05891 -10.83007 -10.77805 -10.47819 -10.35277 -10.19623 -10.11415 -10.01504 -9.62531 -8.83531 -7.57857 -7.09296 -6.17531 -4.61925 3.14648 3.21326 3.24920 4.08916 4.34094 4.56773 4.91046 5.08268 5.12876 5.45984 5.52476 5.63642 5.78636 5.84035 5.92698 5.96749 6.05453 6.18406 6.19896 6.31470 6.41323 6.45030 6.63640 6.74400 6.82563 6.94753 7.38841 7.45355 8.17288 8.55607 9.04040 9.54435 10.60831 10.80507 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.009300 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.369008 B = 3010.023350 C = 3454.179426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.571 3.429 10 O -0.571 6.571 11 N -0.632 5.632 12 C 0.122 3.878 13 C -0.118 4.118 14 C -0.135 4.135 15 H 0.079 0.921 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.102 4.102 19 C 0.142 3.858 20 H 0.033 0.967 21 H 0.268 0.732 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -9.715 -1.123 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.378 3.622 10 O -0.453 6.453 11 N -0.371 5.371 12 C -0.002 4.002 13 C -0.156 4.156 14 C -0.154 4.154 15 H 0.097 0.903 16 C -0.143 4.143 17 C -0.160 4.160 18 C -0.140 4.140 19 C 0.035 3.965 20 H 0.051 0.949 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.115 -9.485 -1.099 10.833 hybrid contribution 0.578 0.824 0.005 1.006 sum 5.693 -8.661 -1.094 10.423 Atomic orbital electron populations 1.70020 1.07038 1.27253 1.35418 1.25728 0.94630 1.00281 0.92657 0.86377 0.80175 0.81414 0.78828 1.19740 1.20431 1.18899 1.20895 0.93576 0.89121 1.54001 0.91387 1.18024 0.86654 0.81275 0.76255 1.90606 1.13710 1.85764 1.55266 1.47982 1.04827 1.04159 1.80136 1.22414 0.83196 0.93946 1.00620 1.22296 0.96933 0.96245 1.00087 1.22645 0.96516 0.95979 1.00275 0.90303 1.21609 0.95530 0.96015 1.01174 1.22880 0.95450 0.96447 1.01190 1.21675 0.97208 0.93327 1.01815 1.20808 0.94041 0.85188 0.96422 0.94878 0.92117 0.92097 0.92797 0.91283 0.91353 0.91940 0.92170 0.91985 0.91983 0.91232 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.35 11.83 55.55 0.66 -22.70 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.59 9.12 -35.63 -0.32 -15.92 16 8 H 0.07 1.81 7.17 -52.48 -0.38 1.44 16 9 C 0.57 16.87 7.81 -12.99 -0.10 16.77 16 10 O -0.57 -18.86 14.74 5.20 0.08 -18.78 16 11 N -0.63 -15.18 3.21 -164.77 -0.53 -15.71 16 12 C 0.12 2.32 6.36 -0.75 0.00 2.31 16 13 C -0.12 -1.74 6.69 -25.37 -0.17 -1.91 16 14 C -0.13 -2.18 3.20 -89.43 -0.29 -2.46 16 15 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.11 -1.40 6.56 -26.19 -0.17 -1.58 16 17 C -0.12 -1.74 6.93 -23.54 -0.16 -1.90 16 18 C -0.10 -1.97 5.97 -26.21 -0.16 -2.13 16 19 C 0.14 2.92 2.81 -68.72 -0.19 2.72 16 20 H 0.03 0.68 7.94 -51.93 -0.41 0.26 16 21 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 22 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 254.48 15.07 3.83 3.83 Total: -1.00 -33.83 254.48 -7.22 -41.05 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.57 Total: -1.36 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.67 Total: -1.74 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.13 Total: -38.41 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.78 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.83 -7.22 -41.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306632394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.472 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds