Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46947 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47250 * 119.99358 * 3 2 1 6 6 H 1.48503 * 109.47333 * 239.99735 * 3 2 1 7 7 C 1.40046 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99772 * 4.69471 * 7 2 1 9 9 C 1.46373 * 120.00358 * 184.69764 * 7 2 1 10 10 O 1.21685 * 119.99810 * 6.32814 * 9 7 2 11 11 N 1.34780 * 119.99957 * 186.32858 * 9 7 2 12 12 C 1.49318 * 127.11370 * 0.02562 * 11 9 7 13 13 C 1.56089 * 106.55405 * 172.78653 * 12 11 9 14 14 C 1.52815 * 101.26342 * 336.20773 * 13 12 11 15 15 H 1.08998 * 112.45904 * 282.58517 * 14 13 12 16 16 C 1.52566 * 119.42092 * 147.57628 * 14 13 12 17 17 C 1.56775 * 101.83047 * 211.29274 * 16 14 13 18 18 C 1.55885 * 106.17713 * 25.04438 * 17 16 14 19 19 C 1.41770 * 127.11211 * 179.70849 * 11 9 7 20 20 H 1.09007 * 105.75288 * 106.67389 * 19 11 9 21 21 H 0.97001 * 119.99475 * 174.89817 * 1 2 3 22 22 H 1.09003 * 110.04456 * 292.06256 * 12 11 9 23 23 H 1.09003 * 110.03928 * 53.46986 * 12 11 9 24 24 H 1.09005 * 111.06337 * 94.19834 * 13 12 11 25 25 H 1.08997 * 111.06894 * 218.20801 * 13 12 11 26 26 H 1.08999 * 110.80323 * 329.83068 * 16 14 13 27 27 H 1.08997 * 110.80867 * 93.34069 * 16 14 13 28 28 H 1.09004 * 109.95067 * 265.89220 * 17 16 14 29 29 H 1.08999 * 110.10290 * 144.28529 * 17 16 14 30 30 H 1.09005 * 110.48681 * 246.57379 * 18 17 16 31 31 H 1.08999 * 110.48245 * 123.93741 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2756 2.7464 -0.0006 5 1 3.0943 1.6965 1.2126 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0756 9 6 3.4670 -1.2148 0.1044 10 8 4.0641 -0.1738 0.3057 11 7 4.1501 -2.3697 -0.0231 12 6 3.5836 -3.7288 -0.2713 13 6 4.7976 -4.6780 -0.5198 14 6 5.8618 -3.6856 -0.9863 15 1 5.7185 -3.3776 -2.0220 16 6 7.3277 -3.9475 -0.6544 17 6 7.8931 -2.4910 -0.5246 18 6 6.6806 -1.5864 -0.1486 19 6 5.5553 -2.5444 0.0447 20 1 5.7479 -3.0249 1.0040 21 1 -0.4849 -0.8368 -0.0747 22 1 3.0199 -4.0634 0.5996 23 1 2.9378 -3.7097 -1.1492 24 1 5.1019 -5.1742 0.4018 25 1 4.5725 -5.4062 -1.2989 26 1 7.4204 -4.4945 0.2838 27 1 7.8189 -4.4835 -1.4665 28 1 8.3196 -2.1715 -1.4755 29 1 8.6492 -2.4511 0.2595 30 1 6.4561 -0.8929 -0.9591 31 1 6.8819 -1.0431 0.7747 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306632395.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = -46.636319 kcal Electronic energy + Delta-G solvation = -14222.055020 eV Core-core repulsion = 11888.624087 eV Total energy + Delta-G solvation = -2333.430933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07295 -36.92748 -34.23554 -32.87905 -30.87127 -27.81261 -26.59113 -25.57672 -22.18799 -20.79561 -20.04150 -18.63642 -17.17720 -16.08000 -15.31080 -14.58559 -14.45496 -14.00900 -13.26637 -13.09283 -12.64918 -12.47519 -12.13880 -12.05485 -11.54060 -11.35217 -10.99767 -10.48664 -10.40140 -10.34693 -10.19037 -10.15998 -9.90745 -9.15477 -8.94705 -7.90953 -7.45313 -6.97636 -4.90229 3.58936 3.67546 3.95651 4.19222 4.32148 4.55155 4.74040 4.87388 4.98998 5.29021 5.34752 5.47769 5.52241 5.68581 5.75402 5.77761 5.89515 6.00661 6.03189 6.12039 6.25689 6.30733 6.41444 6.56647 6.63986 6.73579 7.02913 7.75399 7.84759 8.25541 8.85530 9.07885 10.08089 10.34630 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.010774 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.683123 B = 2598.186772 C = 3121.068535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.060 3.940 3 Si 1.129 2.871 4 H -0.322 1.322 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.567 3.433 10 O -0.611 6.611 11 N -0.619 5.619 12 C 0.123 3.877 13 C -0.121 4.121 14 C -0.132 4.132 15 H 0.085 0.915 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.139 3.861 20 H 0.023 0.977 21 H 0.277 0.723 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 -8.869 -1.936 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.157 4.157 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.628 4.628 8 H 0.089 0.911 9 C 0.378 3.622 10 O -0.504 6.504 11 N -0.353 5.353 12 C 0.000 4.000 13 C -0.158 4.158 14 C -0.151 4.151 15 H 0.103 0.897 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.140 4.140 19 C 0.032 3.968 20 H 0.041 0.959 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.918 -6.731 -1.727 12.942 hybrid contribution -0.020 -2.091 -0.075 2.092 sum 10.898 -8.822 -1.802 14.137 Atomic orbital electron populations 1.70656 1.07570 1.31944 1.35927 1.27164 0.95341 1.04963 0.88261 0.82406 0.71464 0.70802 0.79180 1.25361 1.20710 1.21848 1.22049 0.89730 0.96302 1.54734 0.91101 1.18233 0.88468 0.79840 0.75649 1.90151 1.70724 1.30169 1.59348 1.47220 1.03843 1.07433 1.76835 1.22442 0.95134 0.81890 1.00539 1.22417 0.95560 0.96829 1.01032 1.22949 0.94047 0.97841 1.00303 0.89682 1.22150 0.94864 0.96551 1.01069 1.22975 0.97413 0.94206 1.01111 1.21239 0.92827 0.97422 1.02482 1.20118 0.84778 0.94942 0.96938 0.95912 0.91246 0.92403 0.91792 0.91107 0.90964 0.91434 0.91768 0.91732 0.91900 0.91210 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.48 13.64 55.55 0.76 -23.72 16 2 C 0.06 1.77 5.52 -17.37 -0.10 1.67 16 3 Si 1.13 30.54 25.99 -169.99 -4.42 26.13 16 4 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 5 H -0.28 -7.81 6.78 56.52 0.38 -7.43 16 6 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 7 C -0.59 -17.20 9.53 -35.63 -0.34 -17.54 16 8 H 0.07 2.03 7.47 -52.48 -0.39 1.63 16 9 C 0.57 15.81 7.62 -12.99 -0.10 15.72 16 10 O -0.61 -18.16 11.87 5.20 0.06 -18.09 16 11 N -0.62 -14.25 3.22 -166.73 -0.54 -14.79 16 12 C 0.12 2.28 6.36 -0.82 -0.01 2.27 16 13 C -0.12 -1.70 6.50 -25.17 -0.16 -1.86 16 14 C -0.13 -1.99 3.47 -88.87 -0.31 -2.30 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.11 -1.33 6.50 -24.91 -0.16 -1.49 16 17 C -0.12 -1.55 6.94 -23.15 -0.16 -1.71 16 18 C -0.10 -1.81 6.01 -27.13 -0.16 -1.97 16 19 C 0.14 2.69 2.84 -70.28 -0.20 2.49 16 20 H 0.02 0.44 7.51 -51.92 -0.39 0.05 16 21 H 0.28 7.80 8.72 -40.82 -0.36 7.45 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 250.28 15.07 3.77 3.77 Total: -1.00 -32.23 250.28 -6.66 -38.90 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: -4.60 Total: -7.46 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.70 Total: -4.73 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.22 Total: -38.51 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.06 Total: -18.09 kcal Atomic # 14 Polarization: 30.54 SS G_CDS: -4.42 Total: 26.13 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.23 -6.66 -38.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306632395.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.741 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds