Wall clock time and date at job start Sun Mar 29 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86807 * 119.99744 * 2 1 4 4 H 1.48494 * 109.46945 * 269.99649 * 3 2 1 5 5 H 1.48501 * 109.47142 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.46816 * 149.99377 * 3 2 1 7 7 C 1.40047 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99823 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00327 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99773 * 179.97438 * 9 7 2 12 12 C 1.47434 * 125.62042 * 359.97438 * 11 9 7 13 13 C 1.54887 * 104.83350 * 204.08000 * 12 11 9 14 14 C 1.56450 * 102.03817 * 323.18011 * 13 12 11 15 15 H 1.09007 * 114.60169 * 157.96764 * 14 13 12 16 16 C 1.54031 * 107.77359 * 284.96067 * 14 13 12 17 17 C 1.53556 * 106.21559 * 136.33545 * 16 14 13 18 18 C 1.53506 * 107.20134 * 341.95895 * 17 16 14 19 19 C 1.46693 * 125.61440 * 179.97438 * 11 9 7 20 20 H 1.08994 * 110.73081 * 57.40298 * 19 11 9 21 21 H 0.97001 * 120.00098 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.36598 * 322.92107 * 12 11 9 23 23 H 1.09005 * 110.36679 * 85.12929 * 12 11 9 24 24 H 1.09000 * 110.98765 * 80.88171 * 13 12 11 25 25 H 1.08996 * 110.99226 * 204.66475 * 13 12 11 26 26 H 1.09008 * 110.10591 * 17.14827 * 16 14 13 27 27 H 1.09000 * 110.10908 * 255.53039 * 16 14 13 28 28 H 1.08999 * 109.89188 * 101.35457 * 17 16 14 29 29 H 1.08999 * 109.89283 * 222.39015 * 17 16 14 30 30 H 1.09006 * 109.85795 * 120.08735 * 18 17 16 31 31 H 1.09003 * 109.85647 * 241.16528 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6528 0.7000 6 1 3.5382 1.4403 0.7002 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 3.4164 -3.7920 0.0000 13 6 3.6770 -5.1913 -0.6107 14 6 2.4891 -6.0273 -0.0295 15 1 2.2437 -6.9238 -0.5990 16 6 2.7972 -6.3151 1.4520 17 6 1.4890 -6.0697 2.2176 18 6 0.5830 -5.2263 1.3097 19 6 1.3435 -4.9837 0.0011 20 1 0.6837 -5.1086 -0.8574 21 1 -0.4850 0.8400 -0.0004 22 1 3.8735 -3.0179 -0.6164 23 1 3.8028 -3.7425 1.0181 24 1 3.6236 -5.1585 -1.6989 25 1 4.6367 -5.5888 -0.2807 26 1 3.5739 -5.6398 1.8112 27 1 3.1146 -7.3507 1.5745 28 1 1.0067 -7.0210 2.4422 29 1 1.6959 -5.5315 3.1426 30 1 -0.3422 -5.7656 1.1059 31 1 0.3602 -4.2739 1.7907 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306632397.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:18 Heat of formation + Delta-G solvation = -70.239704 kcal Electronic energy + Delta-G solvation = -14274.692509 eV Core-core repulsion = 11940.238056 eV Total energy + Delta-G solvation = -2334.454453 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06067 -38.23891 -34.94207 -34.66800 -32.21429 -29.60968 -27.88645 -27.49130 -23.64585 -22.09143 -21.05349 -19.98113 -18.43310 -17.79449 -16.92486 -15.91650 -15.78053 -15.34367 -15.10600 -14.83522 -14.27019 -13.63174 -13.22804 -12.98094 -12.77214 -12.67493 -12.41496 -12.22698 -12.13792 -11.97371 -11.85398 -11.57417 -11.39487 -11.12443 -10.95145 -9.82929 -9.04157 -8.30874 -6.86479 1.36458 1.38763 1.53872 2.21713 2.44301 2.90838 3.47898 3.55015 3.73694 3.90395 4.20743 4.33449 4.41529 4.57543 4.66126 4.67652 4.81481 4.84819 4.97382 5.09218 5.12136 5.22857 5.26404 5.30295 5.33186 5.46682 5.57367 5.70587 6.06978 6.48795 6.84834 7.52196 8.47018 8.66609 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047834 B = 0.009812 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.211966 B = 2853.032711 C = 3141.888250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.552 3.448 10 O -0.631 6.631 11 N -0.644 5.644 12 C 0.109 3.891 13 C -0.114 4.114 14 C -0.088 4.088 15 H 0.121 0.879 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.128 4.128 19 C 0.129 3.871 20 H 0.031 0.969 21 H 0.274 0.726 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -10.340 1.410 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.604 4.604 8 H 0.103 0.897 9 C 0.358 3.642 10 O -0.518 6.518 11 N -0.381 5.381 12 C -0.014 4.014 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.139 0.861 16 C -0.145 4.145 17 C -0.150 4.150 18 C -0.167 4.167 19 C 0.024 3.976 20 H 0.049 0.951 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.255 -10.183 1.422 13.834 hybrid contribution -0.480 1.134 -0.016 1.231 sum 8.774 -9.050 1.406 12.683 Atomic orbital electron populations 1.70207 1.09573 1.28882 1.36669 1.27028 0.95554 1.05003 0.91219 0.85023 0.78797 0.74969 0.79536 1.18438 1.19672 1.17128 1.21412 0.94538 0.89839 1.54624 0.89651 1.18383 0.86388 0.83329 0.76089 1.90540 1.16139 1.87473 1.57663 1.48455 1.06996 1.04234 1.78387 1.22170 0.81236 0.98238 0.99792 1.23045 0.99085 0.92743 1.00310 1.23156 0.92965 0.96490 0.98001 0.86067 1.22144 0.96673 1.02893 0.92790 1.21903 0.96109 0.99366 0.97620 1.22172 0.99092 0.98638 0.96832 1.21787 0.95589 0.84580 0.95625 0.95077 0.91617 0.92261 0.92846 0.91178 0.86875 0.91654 0.88351 0.89812 0.93024 0.92235 0.96119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.24 11.83 21.84 0.26 -51.98 16 2 C 0.03 1.54 5.50 85.30 0.47 2.00 16 3 Si 1.00 42.19 29.56 68.60 2.03 44.22 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.57 -33.64 8.98 24.83 0.22 -33.41 16 8 H 0.09 4.57 6.64 -2.91 -0.02 4.55 16 9 C 0.55 33.99 7.32 86.36 0.63 34.62 16 10 O -0.63 -44.56 14.70 -4.31 -0.06 -44.62 16 11 N -0.64 -31.18 3.02 -792.06 -2.39 -33.57 16 12 C 0.11 4.00 6.07 86.85 0.53 4.53 16 13 C -0.11 -2.96 6.34 32.44 0.21 -2.76 16 14 C -0.09 -2.36 4.30 -8.56 -0.04 -2.39 16 15 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 16 C -0.11 -2.54 6.02 31.13 0.19 -2.35 16 17 C -0.11 -3.23 6.78 30.95 0.21 -3.03 16 18 C -0.13 -5.14 6.27 30.86 0.19 -4.95 16 19 C 0.13 5.27 3.43 45.73 0.16 5.42 16 20 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.27 15.69 8.29 -92.71 -0.77 14.93 16 22 H 0.06 2.25 7.14 -2.39 -0.02 2.23 16 23 H 0.05 1.87 7.27 -2.38 -0.02 1.86 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.11 2.08 8.08 -2.39 -0.02 2.06 16 26 H 0.06 1.58 6.59 -2.38 -0.02 1.57 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.02 1.02 7.15 -2.39 -0.02 1.00 16 Total: -1.00 -79.82 249.60 3.71 -76.11 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.11 Total: 12.16 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 2.77 Total: -2.31 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.14 Total: -85.55 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.06 Total: -44.62 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -79.82 3.71 -76.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306632397.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.872 kcal (2) G-P(sol) polarization free energy of solvation -79.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds