Wall clock time and date at job start Sun Mar 29 2020 21:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 120.00337 * 2 1 4 4 O 1.21782 * 120.00407 * 179.97438 * 3 2 1 5 5 C 1.41803 * 119.99817 * 359.97438 * 3 2 1 6 6 H 1.08004 * 120.00143 * 0.02562 * 5 3 2 7 7 C 1.40126 * 120.00004 * 180.02562 * 5 3 2 8 8 N 1.30627 * 120.00065 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99998 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47124 * 59.99691 * 9 7 5 11 11 H 1.48491 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47290 * 300.00209 * 9 7 5 13 13 C 1.40158 * 120.00027 * 179.97438 * 2 1 3 14 14 C 1.40420 * 126.14806 * 180.02562 * 13 2 1 15 15 N 1.30784 * 108.20391 * 180.19326 * 14 13 2 16 16 N 1.40039 * 108.43635 * 359.64390 * 15 14 13 17 17 C 1.46497 * 125.97602 * 180.11692 * 16 15 14 18 18 C 1.35174 * 108.04771 * 0.35904 * 16 15 14 19 19 H 1.08991 * 109.47300 * 270.00741 * 1 2 3 20 20 H 1.09000 * 109.46576 * 30.00480 * 1 2 3 21 21 H 1.08996 * 109.46690 * 150.00176 * 1 2 3 22 22 H 0.97000 * 120.00154 * 179.97438 * 8 7 5 23 23 H 1.08002 * 125.89297 * 359.92177 * 14 13 2 24 24 H 1.09001 * 109.46673 * 270.28467 * 17 16 15 25 25 H 1.09000 * 109.47246 * 30.29085 * 17 16 15 26 26 H 1.09002 * 109.47165 * 150.28519 * 17 16 15 27 27 H 1.08002 * 126.19746 * 179.79312 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3568 1.1672 0.0005 5 6 1.4300 2.3953 -0.0005 6 1 0.3499 2.3953 -0.0005 7 6 2.1306 3.6088 -0.0011 8 7 3.4369 3.6088 -0.0016 9 14 1.1967 5.2265 -0.0011 10 1 0.3433 5.3055 1.2117 11 1 2.1616 6.3552 -0.0023 12 1 0.3424 5.3050 -1.2132 13 6 2.1658 -1.2138 0.0005 14 6 3.5619 -1.3642 0.0011 15 7 3.8351 -2.6432 -0.0027 16 7 2.6284 -3.3538 0.0024 17 6 2.4884 -4.8120 0.0029 18 6 1.6153 -2.4588 0.0014 19 1 -0.3633 0.0001 1.0276 20 1 -0.3632 0.8900 -0.5139 21 1 -0.3632 -0.8900 -0.5138 22 1 3.9219 4.4488 -0.0023 23 1 4.2852 -0.5621 0.0000 24 1 2.4544 -5.1740 -1.0246 25 1 3.3392 -5.2586 0.5176 26 1 1.5674 -5.0885 0.5163 27 1 0.5603 -2.6897 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306664572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:14 Heat of formation + Delta-G solvation = 30.550388 kcal Electronic energy + Delta-G solvation = -13526.698501 eV Core-core repulsion = 11093.074291 eV Total energy + Delta-G solvation = -2433.624210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.05380 -39.55480 -35.94354 -34.65056 -33.75413 -30.66710 -28.70121 -27.84447 -26.34640 -23.10420 -21.72061 -20.70177 -18.51123 -17.97130 -17.32617 -16.42800 -16.19727 -15.83429 -15.42027 -14.87167 -14.42391 -13.65311 -13.47462 -13.38035 -13.36391 -13.11306 -13.01456 -12.67470 -12.27064 -12.03987 -11.59493 -10.99208 -10.69039 -10.18993 -9.70339 -8.30978 -8.19360 -6.89619 0.96393 1.42325 1.44433 1.57561 1.78758 1.91095 2.25481 2.55124 2.91195 3.73451 3.90437 4.07245 4.46294 4.53517 4.54682 4.74495 4.83563 4.85300 4.91306 4.99845 5.33467 5.54806 5.85531 6.10792 6.29046 6.64410 6.81078 6.81863 7.44427 8.46610 8.66039 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.071456 B = 0.008239 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.757500 B = 3397.773284 C = 3769.084731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.573 5.573 3 C 0.530 3.470 4 O -0.619 6.619 5 C -0.563 4.563 6 H 0.098 0.902 7 C 0.030 3.970 8 N -0.805 5.805 9 Si 1.000 3.000 10 H -0.252 1.252 11 H -0.276 1.276 12 H -0.252 1.252 13 C 0.007 3.993 14 C 0.013 3.987 15 N -0.323 5.323 16 N -0.375 5.375 17 C 0.101 3.899 18 C 0.001 3.999 19 H 0.053 0.947 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.277 0.723 23 H 0.168 0.832 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -9.992 -0.034 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.301 5.301 3 C 0.340 3.660 4 O -0.507 6.507 5 C -0.598 4.598 6 H 0.116 0.884 7 C -0.187 4.187 8 N -0.434 5.434 9 Si 0.819 3.181 10 H -0.176 1.176 11 H -0.201 1.201 12 H -0.175 1.175 13 C -0.098 4.098 14 C -0.172 4.172 15 N -0.148 5.148 16 N -0.162 5.162 17 C -0.038 4.038 18 C -0.147 4.147 19 H 0.072 0.928 20 H 0.093 0.907 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.185 0.815 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.137 0.863 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.167 -10.872 -0.037 13.598 hybrid contribution -0.450 1.457 0.006 1.525 sum -8.617 -9.415 -0.031 12.764 Atomic orbital electron populations 1.21769 0.77922 1.03465 1.01747 1.45192 1.07262 1.02615 1.75005 1.17503 0.87044 0.83701 0.77780 1.90468 1.15844 1.86719 1.57652 1.20653 0.95695 0.90183 1.53247 0.88382 1.27065 0.95452 1.05190 0.91011 1.70185 1.09778 1.29301 1.34132 0.85037 0.78236 0.74371 0.80492 1.17594 1.20072 1.17539 1.18405 0.91638 0.87831 1.11956 1.24256 0.96629 0.93566 1.02795 1.77104 1.07021 1.04730 1.25959 1.48395 1.02586 1.07716 1.57546 1.22168 1.05483 0.71661 1.04525 1.22197 0.95982 0.86807 1.09759 0.92813 0.90739 0.89618 0.91332 0.81482 0.89613 0.89330 0.86271 0.76785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.21 9.85 127.77 1.26 4.47 15 2 N -0.57 -27.53 3.11 -665.15 -2.07 -29.60 15 3 C 0.53 31.38 7.43 85.12 0.63 32.01 15 4 O -0.62 -41.74 12.02 -4.61 -0.06 -41.79 15 5 C -0.56 -31.32 8.58 23.61 0.20 -31.12 15 6 H 0.10 4.76 5.88 -2.91 -0.02 4.74 15 7 C 0.03 1.67 5.50 85.33 0.47 2.14 15 8 N -0.81 -48.81 11.73 21.85 0.26 -48.55 15 9 Si 1.00 39.74 29.56 68.60 2.03 41.77 15 10 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 11 H -0.28 -10.68 7.11 99.48 0.71 -9.97 15 12 H -0.25 -9.32 7.11 99.48 0.71 -8.62 15 13 C 0.01 0.30 6.64 37.85 0.25 0.56 15 14 C 0.01 0.65 10.84 85.38 0.93 1.57 15 15 N -0.32 -14.03 12.55 -56.68 -0.71 -14.74 15 16 N -0.38 -12.29 4.02 -368.70 -1.48 -13.77 15 17 C 0.10 1.84 11.47 127.77 1.47 3.31 15 18 C 0.00 0.04 10.64 83.69 0.89 0.93 15 19 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.07 2.60 6.08 -2.39 -0.01 2.59 15 21 H 0.09 2.22 6.88 -2.39 -0.02 2.21 15 22 H 0.28 15.17 8.29 -92.71 -0.77 14.40 15 23 H 0.17 9.75 5.91 -2.91 -0.02 9.74 15 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 15 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.22 4.75 7.26 -2.91 -0.02 4.73 15 Total: -1.00 -81.18 238.11 5.25 -75.93 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.19 Total: 16.89 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.09 Total: 13.86 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -4.00 Total: -106.66 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.06 Total: -41.79 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -81.18 5.25 -75.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306664572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.481 kcal (2) G-P(sol) polarization free energy of solvation -81.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds