Wall clock time and date at job start Sun Mar 29 2020 21:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 C 1.55929 * 115.91887 * 297.93694 * 12 10 9 14 14 C 1.54577 * 104.64295 * 199.96989 * 13 12 10 15 15 C 1.55930 * 104.64483 * 359.97438 * 14 13 12 16 16 C 1.55924 * 105.22837 * 289.53264 * 15 14 13 17 17 C 1.55926 * 115.92064 * 62.06221 * 12 10 9 18 18 C 1.56948 * 116.22304 * 180.02562 * 12 10 9 19 19 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 21 21 H 1.09004 * 110.40399 * 318.76299 * 13 12 10 22 22 H 1.09001 * 110.40163 * 81.17684 * 13 12 10 23 23 H 1.09007 * 110.40469 * 241.21001 * 14 13 12 24 24 H 1.08999 * 110.50487 * 118.84413 * 14 13 12 25 25 H 1.08998 * 115.92309 * 160.03140 * 15 14 13 26 26 H 1.09003 * 110.39920 * 189.25891 * 16 15 14 27 27 H 1.08994 * 110.40297 * 311.55555 * 16 15 14 28 28 H 1.09000 * 110.40089 * 278.82113 * 17 12 10 29 29 H 1.08996 * 110.40110 * 41.24760 * 17 12 10 30 30 H 1.08991 * 112.02840 * 296.35082 * 18 12 10 31 31 H 1.09004 * 112.02803 * 62.88045 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 6 0.3337 -5.1315 1.2168 14 6 0.1137 -6.6615 1.2153 15 6 0.9111 -7.1733 -0.0231 16 6 0.1102 -6.6698 -1.2626 17 6 0.3345 -5.1179 -1.2611 18 6 2.1165 -6.1675 -0.0267 19 1 -0.4849 0.8400 0.0004 20 1 0.3535 -2.3907 -0.0068 21 1 0.8361 -4.8207 2.1329 22 1 -0.6177 -4.6106 1.1088 23 1 -0.9460 -6.8930 1.1066 24 1 0.5065 -7.1047 2.1304 25 1 1.1680 -8.2325 -0.0199 26 1 0.5024 -7.1175 -2.1758 27 1 -0.9488 -6.9023 -1.1507 28 1 -0.6170 -4.5983 -1.1480 29 1 0.8377 -4.7972 -2.1733 30 1 2.7172 -6.2531 -0.9321 31 1 2.7260 -6.2560 0.8727 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306705350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:13 Heat of formation + Delta-G solvation = -50.089124 kcal Electronic energy + Delta-G solvation = -14061.974583 eV Core-core repulsion = 11728.393925 eV Total energy + Delta-G solvation = -2333.580658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01449 -37.30076 -33.88956 -31.23876 -30.10908 -29.19032 -27.25071 -24.89750 -21.91286 -21.13223 -19.14933 -18.14200 -17.69553 -16.13796 -14.95877 -14.82588 -14.65970 -13.97640 -13.49175 -13.03544 -12.27851 -12.24662 -11.74756 -11.42650 -11.37512 -11.13565 -10.94408 -10.69931 -10.61273 -10.47400 -10.32695 -10.24717 -9.89630 -9.66672 -9.46789 -8.29424 -7.93870 -6.39778 -3.80150 3.17208 3.27822 3.35377 3.88591 4.19162 4.70052 4.78536 4.86600 5.11088 5.29689 5.42382 5.49659 5.58454 5.68624 5.70088 5.84340 6.04972 6.08652 6.13621 6.27356 6.31846 6.38325 6.44151 6.54325 6.55908 6.69737 6.74595 7.57218 8.09736 8.64555 9.20107 9.59255 10.11055 10.77989 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058103 B = 0.008283 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.785584 B = 3379.544731 C = 3522.223527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.557 5.557 10 C 0.469 3.531 11 O -0.595 6.595 12 C -0.085 4.085 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.093 4.093 19 H 0.271 0.729 20 H 0.393 0.607 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 -10.638 -0.059 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.192 5.192 10 C 0.255 3.745 11 O -0.480 6.480 12 C -0.089 4.089 13 C -0.148 4.148 14 C -0.154 4.154 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.131 4.131 19 H 0.081 0.919 20 H 0.226 0.774 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.507 -10.442 -0.058 10.739 hybrid contribution -0.295 0.959 0.004 1.003 sum -2.802 -9.483 -0.054 9.889 Atomic orbital electron populations 1.69625 1.05927 1.28017 1.50582 1.25268 0.95631 0.99705 0.97337 0.85810 0.79731 0.81170 0.77703 1.19221 1.20744 1.20748 1.19790 0.93426 0.82345 1.47429 0.87897 1.41871 1.09244 1.04493 1.63588 1.19138 0.87546 0.83894 0.83964 1.90505 1.13900 1.87255 1.56351 1.22830 0.95670 0.94295 0.96079 1.22559 0.99107 0.95486 0.97623 1.22582 0.99469 0.95671 0.97650 1.23578 0.96148 0.98047 0.95116 1.22958 0.99377 0.95505 0.97564 1.22942 0.99019 0.95258 0.97514 1.23277 0.95661 0.92278 1.01853 0.91937 0.77369 0.91672 0.91462 0.92000 0.92096 0.88838 0.92049 0.91977 0.91471 0.91596 0.91277 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.60 5.29 -10.96 -0.06 -14.65 16 10 C 0.47 11.61 7.15 -10.98 -0.08 11.54 16 11 O -0.59 -16.90 16.08 5.55 0.09 -16.81 16 12 C -0.09 -1.61 1.27 -150.39 -0.19 -1.80 16 13 C -0.11 -1.80 5.88 -24.34 -0.14 -1.94 16 14 C -0.12 -1.52 6.22 -24.34 -0.15 -1.67 16 15 C -0.11 -1.45 5.14 -85.33 -0.44 -1.89 16 16 C -0.12 -1.52 6.33 -23.11 -0.15 -1.67 16 17 C -0.11 -1.79 5.99 -23.11 -0.14 -1.93 16 18 C -0.09 -1.56 5.64 -22.43 -0.13 -1.68 16 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 23 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 28 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 255.95 15.07 3.86 3.86 Total: -1.00 -30.67 255.95 -6.49 -37.16 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.43 Total: 7.50 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.65 Total: -9.25 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.67 Total: -38.73 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.09 Total: -16.81 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.67 -6.49 -37.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306705350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.928 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds