Wall clock time and date at job start Sun Mar 29 2020 21:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 C 1.55929 * 115.91887 * 297.93694 * 12 10 9 14 14 C 1.54577 * 104.64295 * 199.96989 * 13 12 10 15 15 C 1.55930 * 104.64483 * 359.97438 * 14 13 12 16 16 C 1.55924 * 105.22837 * 289.53264 * 15 14 13 17 17 C 1.55926 * 115.92064 * 62.06221 * 12 10 9 18 18 C 1.56948 * 116.22304 * 180.02562 * 12 10 9 19 19 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 21 21 H 1.09004 * 110.40399 * 318.76299 * 13 12 10 22 22 H 1.09001 * 110.40163 * 81.17684 * 13 12 10 23 23 H 1.09007 * 110.40469 * 241.21001 * 14 13 12 24 24 H 1.08999 * 110.50487 * 118.84413 * 14 13 12 25 25 H 1.08998 * 115.92309 * 160.03140 * 15 14 13 26 26 H 1.09003 * 110.39920 * 189.25891 * 16 15 14 27 27 H 1.08994 * 110.40297 * 311.55555 * 16 15 14 28 28 H 1.09000 * 110.40089 * 278.82113 * 17 12 10 29 29 H 1.08996 * 110.40110 * 41.24760 * 17 12 10 30 30 H 1.08991 * 112.02840 * 296.35082 * 18 12 10 31 31 H 1.09004 * 112.02803 * 62.88045 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 6 0.3337 -5.1315 1.2168 14 6 0.1137 -6.6615 1.2153 15 6 0.9111 -7.1733 -0.0231 16 6 0.1102 -6.6698 -1.2626 17 6 0.3345 -5.1179 -1.2611 18 6 2.1165 -6.1675 -0.0267 19 1 -0.4849 0.8400 0.0004 20 1 0.3535 -2.3907 -0.0068 21 1 0.8361 -4.8207 2.1329 22 1 -0.6177 -4.6106 1.1088 23 1 -0.9460 -6.8930 1.1066 24 1 0.5065 -7.1047 2.1304 25 1 1.1680 -8.2325 -0.0199 26 1 0.5024 -7.1175 -2.1758 27 1 -0.9488 -6.9023 -1.1507 28 1 -0.6170 -4.5983 -1.1480 29 1 0.8377 -4.7972 -2.1733 30 1 2.7172 -6.2531 -0.9321 31 1 2.7260 -6.2560 0.8727 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306705350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:13 Heat of formation + Delta-G solvation = -69.974605 kcal Electronic energy + Delta-G solvation = -14062.836882 eV Core-core repulsion = 11728.393925 eV Total energy + Delta-G solvation = -2334.442957 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43343 -39.17882 -36.01622 -33.33448 -31.27759 -30.59497 -28.52951 -26.95090 -23.07659 -22.89826 -20.47260 -19.99924 -19.45625 -17.73865 -16.85093 -16.29784 -15.93339 -15.81202 -15.29505 -14.94039 -13.65488 -13.60748 -13.48098 -13.03896 -12.98409 -12.62288 -12.47022 -12.15963 -12.13493 -11.93416 -11.79764 -11.70956 -11.56542 -11.17326 -10.83238 -10.30023 -10.06328 -8.50891 -6.00514 1.33367 1.38661 1.53580 1.97137 2.27193 3.13569 3.17344 3.49574 3.64719 3.68918 4.25543 4.28853 4.31362 4.50781 4.54760 4.60844 4.63336 4.77175 4.87394 5.07564 5.09355 5.16110 5.24497 5.28273 5.36530 5.40800 5.41606 5.50605 5.96874 6.54526 7.07079 7.51662 8.06939 8.66758 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058103 B = 0.008283 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.785584 B = 3379.544731 C = 3522.223527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.564 5.564 10 C 0.461 3.539 11 O -0.640 6.640 12 C -0.101 4.101 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.090 4.090 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.099 4.099 19 H 0.279 0.721 20 H 0.396 0.604 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -11.915 -0.073 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.095 0.905 9 N -0.198 5.198 10 C 0.249 3.751 11 O -0.529 6.529 12 C -0.104 4.104 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.108 4.108 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.137 4.137 19 H 0.089 0.911 20 H 0.229 0.771 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.146 0.854 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.019 -11.731 -0.072 12.400 hybrid contribution 0.187 1.391 0.008 1.403 sum -3.832 -10.340 -0.064 11.027 Atomic orbital electron populations 1.69682 1.06860 1.29392 1.49859 1.26096 0.96604 1.02483 0.95973 0.84846 0.77944 0.76830 0.78546 1.19881 1.19302 1.19303 1.19755 0.92711 0.84167 1.50349 0.90480 1.41928 1.09245 1.04632 1.64037 1.20268 0.87459 0.85551 0.81813 1.90453 1.16188 1.88270 1.57979 1.22802 0.96950 0.91647 0.99040 1.22572 0.98118 0.98707 0.95224 1.22584 1.01241 0.92311 0.98388 1.23627 0.93395 0.98753 0.95015 1.22959 1.01140 0.92010 0.98297 1.22957 0.98028 0.98608 0.95108 1.23338 0.96891 0.92653 1.00797 0.91130 0.77053 0.93591 0.91232 0.89321 0.90724 0.85355 0.90624 0.89300 0.91249 0.93505 0.92406 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.61 13.05 21.67 0.28 -50.32 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 3 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.34 -20.21 9.68 84.04 0.81 -19.39 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -30.82 5.29 -306.97 -1.62 -32.45 16 10 C 0.46 23.92 7.15 87.66 0.63 24.55 16 11 O -0.64 -38.48 16.08 -3.07 -0.05 -38.52 16 12 C -0.10 -3.85 1.27 -49.52 -0.06 -3.91 16 13 C -0.11 -3.44 5.88 32.14 0.19 -3.25 16 14 C -0.11 -2.43 6.22 32.15 0.20 -2.23 16 15 C -0.09 -2.01 5.14 -7.37 -0.04 -2.05 16 16 C -0.11 -2.38 6.33 32.94 0.21 -2.18 16 17 C -0.11 -3.47 5.99 32.94 0.20 -3.27 16 18 C -0.10 -3.25 5.64 33.38 0.19 -3.06 16 19 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 20 H 0.40 20.68 7.90 -92.71 -0.73 19.95 16 21 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 23 H 0.09 1.60 7.87 -2.38 -0.02 1.58 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.60 7.87 -2.39 -0.02 1.58 16 28 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -68.81 255.95 3.81 -64.99 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.39 Total: 25.35 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 2.79 Total: -14.96 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.34 Total: -82.77 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.05 Total: -38.52 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.81 3.81 -64.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306705350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.980 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds