Wall clock time and date at job start Sun Mar 29 2020 21:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99967 * 3 2 1 5 5 H 1.48496 * 109.47058 * 30.00146 * 3 2 1 6 6 H 1.48503 * 109.46974 * 150.00048 * 3 2 1 7 7 C 1.39071 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00483 * 359.97438 * 7 2 1 9 9 N 1.36820 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99871 * 179.97438 * 9 7 2 11 11 O 1.21657 * 120.00254 * 359.97438 * 10 9 7 12 12 C 1.46957 * 119.99679 * 180.02562 * 10 9 7 13 13 C 1.33125 * 119.99807 * 186.98834 * 12 10 9 14 14 C 1.51265 * 120.84825 * 12.15427 * 13 12 10 15 15 C 1.53665 * 108.30809 * 128.62201 * 14 13 12 16 16 C 1.52959 * 109.32383 * 54.85912 * 15 14 13 17 17 C 1.52960 * 109.82029 * 296.27228 * 16 15 14 18 18 C 1.51268 * 120.84829 * 192.44194 * 13 12 10 19 19 H 0.96998 * 120.00007 * 0.02562 * 1 2 3 20 20 H 0.96995 * 119.99646 * 359.97438 * 9 7 2 21 21 H 1.07997 * 120.00073 * 6.70699 * 12 10 9 22 22 H 1.09005 * 109.62809 * 248.39436 * 14 13 12 23 23 H 1.08998 * 109.62834 * 8.96538 * 14 13 12 24 24 H 1.08998 * 109.63135 * 294.84016 * 15 14 13 25 25 H 1.08998 * 109.42723 * 174.75494 * 15 14 13 26 26 H 1.09001 * 109.41686 * 176.16455 * 16 15 14 27 27 H 1.09008 * 109.41214 * 56.37949 * 16 15 14 28 28 H 1.08999 * 109.47736 * 303.61873 * 17 16 15 29 29 H 1.08991 * 109.48263 * 183.57835 * 17 16 15 30 30 H 1.09004 * 109.62767 * 351.03338 * 18 13 12 31 31 H 1.08993 * 109.62833 * 111.60687 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4000 5 1 1.4450 2.6526 0.7001 6 1 3.5451 1.4401 0.7000 7 6 2.0088 -1.2044 -0.0005 8 1 1.4688 -2.1397 -0.0005 9 7 3.3770 -1.2045 0.0000 10 6 4.0508 -2.3717 0.0000 11 8 3.4425 -3.4253 0.0000 12 6 5.5204 -2.3717 0.0011 13 6 6.1861 -3.5160 -0.1391 14 6 5.4747 -4.7793 -0.5706 15 6 6.2425 -5.3848 -1.7560 16 6 7.7055 -5.5899 -1.3597 17 6 8.3590 -4.2376 -1.0705 18 6 7.6719 -3.5876 0.1351 19 1 -0.4850 0.8400 -0.0004 20 1 3.8619 -0.3645 0.0004 21 1 6.0603 -1.4429 0.1112 22 1 5.4541 -5.4888 0.2567 23 1 4.4563 -4.5398 -0.8765 24 1 6.1885 -4.7101 -2.6103 25 1 5.8000 -6.3447 -2.0223 26 1 8.2362 -6.0818 -2.1749 27 1 7.7551 -6.2145 -0.4676 28 1 8.2549 -3.5900 -1.9411 29 1 9.4164 -4.3844 -0.8508 30 1 8.0659 -2.5821 0.2828 31 1 7.8512 -4.1886 1.0265 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306715162.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:08 Heat of formation + Delta-G solvation = -56.036329 kcal Electronic energy + Delta-G solvation = -13562.092906 eV Core-core repulsion = 11228.254358 eV Total energy + Delta-G solvation = -2333.838548 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64035 -38.76905 -36.09938 -33.84539 -33.38879 -31.77438 -28.51162 -26.23314 -23.76300 -22.47062 -21.29067 -20.62809 -18.91396 -17.73969 -16.77174 -16.20704 -15.74818 -15.32700 -15.10070 -14.88642 -14.41359 -14.31434 -14.07770 -13.47075 -13.09315 -13.01809 -12.68721 -12.45060 -12.03106 -11.93625 -11.71310 -11.59494 -11.41648 -11.10524 -10.33174 -9.97510 -9.74077 -8.46343 -6.02817 0.56983 1.28371 1.36229 1.42154 2.19644 2.42100 3.00933 3.22050 3.87587 3.92301 4.12135 4.16877 4.31139 4.47092 4.54911 4.57585 4.71977 4.86471 5.06233 5.10568 5.19801 5.23299 5.24881 5.41173 5.50960 5.54900 5.69069 5.79379 6.07181 6.57023 6.85698 7.37679 7.96839 8.71139 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057768 B = 0.007257 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.581366 B = 3857.540988 C = 4181.351224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.235 1.235 7 C -0.331 4.331 8 H 0.058 0.942 9 N -0.582 5.582 10 C 0.472 3.528 11 O -0.619 6.619 12 C -0.229 4.229 13 C -0.036 4.036 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.085 4.085 19 H 0.281 0.719 20 H 0.389 0.611 21 H 0.149 0.851 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.810 -2.801 -1.685 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.158 1.158 7 C -0.460 4.460 8 H 0.076 0.924 9 N -0.220 5.220 10 C 0.264 3.736 11 O -0.508 6.508 12 C -0.249 4.249 13 C -0.039 4.039 14 C -0.162 4.162 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.121 4.121 19 H 0.091 0.909 20 H 0.225 0.775 21 H 0.166 0.834 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.185 -3.354 -1.685 19.548 hybrid contribution -0.689 0.920 0.065 1.151 sum 18.495 -2.435 -1.619 18.725 Atomic orbital electron populations 1.69766 1.08108 1.29449 1.49512 1.26148 0.96505 1.02695 0.95895 0.85371 0.79448 0.76737 0.80061 1.18022 1.19508 1.15815 1.19063 0.81575 0.95138 1.50237 0.92426 1.41998 1.05916 1.07646 1.66480 1.19006 0.89387 0.83226 0.81956 1.90467 1.71573 1.31754 1.56957 1.22390 0.91029 1.00279 1.11231 1.22909 0.97060 0.93899 0.90006 1.21531 1.01327 0.94775 0.98530 1.21646 0.96445 1.00241 0.96678 1.21552 0.94206 0.97756 1.02044 1.21583 1.00036 0.96150 0.97282 1.20994 0.88472 1.03083 0.99600 0.90926 0.77541 0.83383 0.91663 0.90030 0.92857 0.91620 0.90406 0.91497 0.92057 0.89146 0.89272 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.95 21.68 0.30 -56.35 16 2 C -0.01 -0.74 5.50 84.97 0.47 -0.27 16 3 Si 0.96 39.88 27.74 68.60 1.90 41.78 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -8.37 6.52 99.48 0.65 -7.72 16 7 C -0.33 -20.06 10.16 84.12 0.85 -19.21 16 8 H 0.06 4.11 7.38 -2.91 -0.02 4.09 16 9 N -0.58 -29.35 5.08 -310.42 -1.58 -30.93 16 10 C 0.47 23.17 7.56 86.53 0.65 23.83 16 11 O -0.62 -35.52 12.79 -4.21 -0.05 -35.57 16 12 C -0.23 -8.16 9.65 23.41 0.23 -7.94 16 13 C -0.04 -1.12 5.38 -17.24 -0.09 -1.21 16 14 C -0.12 -4.30 5.32 30.25 0.16 -4.14 16 15 C -0.11 -2.94 5.95 30.80 0.18 -2.75 16 16 C -0.12 -2.22 5.81 30.57 0.18 -2.05 16 17 C -0.11 -1.93 5.94 30.66 0.18 -1.75 16 18 C -0.08 -1.73 6.04 30.11 0.18 -1.55 16 19 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 20 H 0.39 16.49 5.74 -92.71 -0.53 15.96 16 21 H 0.15 4.12 7.96 -2.91 -0.02 4.10 16 22 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.08 3.67 4.79 -17.13 -0.08 3.59 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.52 7.93 -2.39 -0.02 1.50 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -73.94 254.85 4.03 -69.91 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.46 Total: 28.21 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 3.00 Total: -17.04 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.27 Total: -87.28 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.05 Total: -35.57 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.90 Total: 41.78 kcal Total: -73.94 4.03 -69.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306715162.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.870 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds