Wall clock time and date at job start Sun Mar 29 2020 21:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 125.50343 * 2 1 4 4 C 1.35755 * 108.86724 * 179.97438 * 3 2 1 5 5 C 1.47326 * 126.23812 * 179.97438 * 4 3 2 6 6 O 1.21621 * 120.00515 * 180.02562 * 5 4 3 7 7 N 1.34784 * 119.99489 * 0.02990 * 5 4 3 8 8 C 1.46502 * 119.99679 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46790 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99801 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99984 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99848 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46836 * 90.00272 * 13 11 9 15 15 H 1.48496 * 109.46835 * 209.99967 * 13 11 9 16 16 H 1.48495 * 109.47499 * 329.99981 * 13 11 9 17 17 C 1.36427 * 107.53322 * 359.73693 * 4 3 2 18 18 N 1.35382 * 106.86682 * 0.41689 * 17 4 3 19 19 H 0.97001 * 126.13788 * 179.85411 * 18 17 4 20 20 H 1.09000 * 109.47418 * 270.03529 * 1 2 3 21 21 H 1.09003 * 109.46632 * 30.03209 * 1 2 3 22 22 H 1.08994 * 109.47215 * 150.02845 * 1 2 3 23 23 H 0.96995 * 119.99744 * 359.97438 * 7 5 4 24 24 H 1.09001 * 109.46994 * 299.99615 * 8 7 5 25 25 H 1.08992 * 109.47170 * 59.99718 * 8 7 5 26 26 H 0.96991 * 120.00180 * 179.97438 * 12 11 9 27 27 H 1.07994 * 126.57270 * 180.26565 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2629 1.0597 0.0000 4 6 3.5637 0.6710 0.0006 5 6 4.7383 1.5603 0.0002 6 8 5.8589 1.0876 0.0004 7 7 4.5710 2.8977 -0.0001 8 6 5.7390 3.7819 0.0001 9 6 5.2819 5.2180 -0.0010 10 1 4.2268 5.4488 -0.0014 11 6 6.2106 6.2371 -0.0005 12 7 5.8116 7.4902 -0.0009 13 14 8.0354 5.8377 0.0024 14 1 8.5208 5.7310 -1.3969 15 1 8.7771 6.9169 0.7026 16 1 8.2589 4.5480 0.7036 17 6 3.5850 -0.6930 0.0069 18 7 2.2958 -1.1061 0.0006 19 1 1.9900 -2.0267 0.0009 20 1 -0.3634 0.0006 1.0276 21 1 -0.3633 0.8897 -0.5144 22 1 -0.3633 -0.8902 -0.5134 23 1 3.6773 3.2746 -0.0005 24 1 6.3385 3.5918 0.8904 25 1 6.3392 3.5914 -0.8895 26 1 6.4649 8.2072 -0.0002 27 1 4.4623 -1.3228 0.0130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306769002.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:53 Heat of formation + Delta-G solvation = -17.826043 kcal Electronic energy + Delta-G solvation = -12965.358541 eV Core-core repulsion = 10529.636572 eV Total energy + Delta-G solvation = -2435.721969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.13508 -40.16012 -36.16516 -34.47476 -33.66437 -32.72063 -30.08880 -28.06066 -25.10355 -23.08112 -21.84932 -21.19034 -19.68119 -18.58395 -17.28118 -16.85811 -16.69251 -16.01572 -15.76176 -15.08913 -14.84665 -14.35511 -14.18641 -14.11397 -13.41767 -13.15465 -13.05640 -12.68691 -11.90977 -11.68687 -11.41132 -11.16258 -11.02786 -10.91475 -9.99709 -9.46676 -8.39354 -6.47391 0.58937 1.34683 1.35375 1.41768 1.49921 2.03594 2.29670 2.54979 2.56594 2.95356 3.34212 4.05185 4.08944 4.39341 4.69723 4.76787 4.80944 4.86379 5.01097 5.14333 5.24651 5.44327 5.50133 6.07391 6.41682 6.52538 6.74771 6.96970 7.14886 7.35544 8.75944 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.056325 B = 0.006865 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.999571 B = 4077.691230 C = 4554.243601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.213 3.787 3 N -0.503 5.503 4 C -0.099 4.099 5 C 0.584 3.416 6 O -0.594 6.594 7 N -0.696 5.696 8 C 0.232 3.768 9 C -0.551 4.551 10 H 0.052 0.948 11 C 0.025 3.975 12 N -0.932 5.932 13 Si 0.944 3.056 14 H -0.262 1.262 15 H -0.270 1.270 16 H -0.258 1.258 17 C 0.055 3.945 18 N -0.541 5.541 19 H 0.447 0.553 20 H 0.097 0.903 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.407 0.593 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.274 0.726 27 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.147 -20.039 0.009 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 N -0.225 5.225 4 C -0.227 4.227 5 C 0.372 3.628 6 O -0.477 6.477 7 N -0.343 5.343 8 C 0.109 3.891 9 C -0.589 4.589 10 H 0.070 0.930 11 C -0.175 4.175 12 N -0.571 5.571 13 Si 0.767 3.233 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.183 1.183 17 C -0.087 4.087 18 N -0.146 5.146 19 H 0.290 0.710 20 H 0.115 0.885 21 H 0.105 0.895 22 H 0.129 0.871 23 H 0.242 0.758 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.552 -19.257 0.007 21.495 hybrid contribution 0.668 -0.452 -0.003 0.807 sum -8.883 -19.709 0.004 21.618 Atomic orbital electron populations 1.20430 0.81032 1.05736 1.05164 1.24327 0.97379 0.80728 1.02903 1.70541 1.01020 1.30883 1.20053 1.20473 0.91341 0.93083 1.17753 1.17537 0.87422 0.82102 0.75780 1.90686 1.25893 1.76570 1.54540 1.45923 1.11121 1.05413 1.71872 1.19173 0.85571 0.88396 0.95970 1.21277 0.94827 0.89702 1.53088 0.93009 1.25669 1.04143 0.94396 0.93300 1.69992 1.36654 0.99881 1.50534 0.85761 0.79042 0.78881 0.79639 1.18714 1.19469 1.18252 1.22847 0.89115 0.94731 1.02040 1.43023 1.04976 1.11376 1.55250 0.71003 0.88456 0.89455 0.87120 0.75756 0.96477 0.96588 0.91730 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.51 71.23 0.75 0.03 15 2 C 0.21 4.52 8.15 137.96 1.12 5.64 15 3 N -0.50 -16.42 11.01 -176.78 -1.95 -18.37 15 4 C -0.10 -3.49 6.98 40.51 0.28 -3.21 15 5 C 0.58 26.14 7.81 86.63 0.68 26.82 15 6 O -0.59 -29.10 16.88 -4.10 -0.07 -29.17 15 7 N -0.70 -33.60 5.55 -470.18 -2.61 -36.20 15 8 C 0.23 12.53 4.50 85.63 0.38 12.92 15 9 C -0.55 -32.97 9.83 25.60 0.25 -32.72 15 10 H 0.05 3.31 7.84 -2.91 -0.02 3.29 15 11 C 0.03 1.49 5.47 84.66 0.46 1.95 15 12 N -0.93 -58.00 13.96 21.45 0.30 -57.71 15 13 Si 0.94 45.76 27.47 68.60 1.88 47.64 15 14 H -0.26 -12.21 7.11 99.48 0.71 -11.50 15 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 16 H -0.26 -12.38 6.54 99.48 0.65 -11.73 15 17 C 0.05 1.32 11.75 83.72 0.98 2.30 15 18 N -0.54 -8.55 6.09 -185.75 -1.13 -9.68 15 19 H 0.45 2.43 8.96 -92.71 -0.83 1.60 15 20 H 0.10 0.84 8.14 -2.39 -0.02 0.82 15 21 H 0.09 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.11 0.42 8.14 -2.39 -0.02 0.40 15 23 H 0.41 19.06 8.03 -92.71 -0.74 18.31 15 24 H 0.02 0.96 7.20 -2.39 -0.02 0.94 15 25 H 0.02 0.88 7.57 -2.39 -0.02 0.87 15 26 H 0.27 15.72 8.31 -92.72 -0.77 14.95 15 27 H 0.21 4.05 8.06 -2.91 -0.02 4.02 15 Total: -1.00 -79.28 247.09 0.92 -78.36 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.42 Total: 11.39 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.92 Total: 13.73 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.38 Total: -121.96 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.07 Total: -29.17 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -79.28 0.92 -78.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306769002.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.533 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds