Wall clock time and date at job start Sun Mar 29 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.81490 * 2 1 4 4 C 1.53023 * 109.64085 * 239.46553 * 2 1 3 5 5 C 1.50073 * 110.14420 * 190.88442 * 4 2 1 6 6 C 1.29442 * 124.07933 * 17.12923 * 5 4 2 7 7 C 1.50066 * 124.07239 * 359.51269 * 6 5 4 8 8 C 1.53038 * 110.14050 * 17.16534 * 7 6 5 9 9 H 1.09007 * 109.65871 * 70.22704 * 8 7 6 10 10 C 1.50701 * 109.63807 * 190.85793 * 8 7 6 11 11 O 1.21291 * 119.99851 * 35.30698 * 10 8 7 12 12 N 1.34784 * 120.00396 * 215.30917 * 10 8 7 13 13 C 1.37089 * 120.00103 * 180.02562 * 12 10 8 14 14 H 1.08003 * 120.00380 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99940 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00091 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47068 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46892 * 119.99824 * 17 15 13 20 20 H 1.48493 * 109.47093 * 239.99676 * 17 15 13 21 21 H 1.09001 * 109.47410 * 185.95817 * 1 2 3 22 22 H 1.08993 * 109.46862 * 305.96347 * 1 2 3 23 23 H 1.09001 * 109.46615 * 65.96094 * 1 2 3 24 24 H 1.08996 * 109.36293 * 311.08742 * 4 2 1 25 25 H 1.08994 * 109.35604 * 70.68189 * 4 2 1 26 26 H 1.08004 * 117.95920 * 197.11389 * 5 4 2 27 27 H 1.07991 * 117.96419 * 179.53178 * 6 5 4 28 28 H 1.09002 * 109.35771 * 137.35765 * 7 6 5 29 29 H 1.09004 * 109.36074 * 257.08232 * 7 6 5 30 30 H 0.97004 * 119.99140 * 359.97438 * 12 10 8 31 31 H 0.96997 * 120.00028 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0254 0.0000 4 6 2.0444 -0.7322 -1.2413 5 6 3.5212 -0.9724 -1.1249 6 6 4.1818 -0.9037 -0.0138 7 6 3.5650 -0.5640 1.3114 8 6 2.0456 -0.7338 1.2445 9 1 1.7977 -1.7930 1.1744 10 6 1.4150 -0.1424 2.4788 11 8 1.8894 0.8527 2.9848 12 7 0.3239 -0.7191 3.0206 13 6 -0.2500 -0.1807 4.1432 14 1 0.1724 0.7053 4.5937 15 6 -1.3751 -0.7750 4.7014 16 7 -1.8894 -1.8528 4.1530 17 14 -2.1567 -0.0418 6.2315 18 1 -1.3933 1.1615 6.6492 19 1 -3.5605 0.3414 5.9351 20 1 -2.1381 -1.0451 7.3260 21 1 -0.3634 -1.0221 0.1067 22 1 -0.3633 0.6035 0.8317 23 1 -0.3632 0.4186 -0.9386 24 1 1.5294 -1.6881 -1.3364 25 1 1.8454 -0.1273 -2.1259 26 1 4.0667 -1.2181 -2.0240 27 1 5.2428 -1.1029 -0.0424 28 1 3.9689 -1.2253 2.0780 29 1 3.8005 0.4696 1.5652 30 1 -0.0556 -1.5147 2.6157 31 1 -2.6746 -2.2678 4.5429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306823217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:15 Heat of formation + Delta-G solvation = -65.590629 kcal Electronic energy + Delta-G solvation = -13936.154729 eV Core-core repulsion = 11601.901875 eV Total energy + Delta-G solvation = -2334.252854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98296 -38.55910 -35.99216 -33.82323 -33.06983 -31.80772 -27.69107 -27.08983 -24.49066 -22.38794 -20.83963 -19.85038 -18.88875 -17.70830 -16.78461 -16.21550 -15.96606 -15.72585 -15.05155 -14.60914 -14.11900 -13.97647 -13.70043 -13.39902 -13.00172 -12.97997 -12.93527 -12.64543 -12.41157 -12.13432 -11.63548 -11.57842 -11.41811 -11.17910 -10.24527 -10.02062 -9.78559 -8.47832 -5.96685 1.34650 1.39985 1.47971 1.54353 2.03755 2.28861 3.17972 3.19241 3.75605 3.86021 3.96712 4.30506 4.40081 4.43124 4.49316 4.62421 4.65970 4.82308 4.90844 5.02438 5.10354 5.17778 5.21942 5.32956 5.40428 5.47086 5.83114 5.99117 6.12181 6.57982 7.10900 7.55406 8.10794 8.69652 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054568 B = 0.008209 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.999169 B = 3410.179206 C = 3630.953234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.162 4.162 7 C -0.075 4.075 8 C -0.087 4.087 9 H 0.089 0.911 10 C 0.448 3.552 11 O -0.640 6.640 12 N -0.566 5.566 13 C -0.337 4.337 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.918 5.918 17 Si 0.992 3.008 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.269 1.269 21 H 0.058 0.942 22 H 0.024 0.976 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.123 0.877 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 -1.796 -10.653 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.171 4.171 6 C -0.180 4.180 7 C -0.112 4.112 8 C -0.109 4.109 9 H 0.107 0.893 10 C 0.236 3.764 11 O -0.528 6.528 12 N -0.201 5.201 13 C -0.466 4.466 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.559 5.559 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.077 0.923 22 H 0.043 0.957 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.565 -1.273 -10.258 11.740 hybrid contribution -0.656 -0.010 0.970 1.171 sum 4.909 -1.283 -9.288 10.583 Atomic orbital electron populations 1.21829 0.94889 1.01932 1.01555 1.21059 0.95570 0.98934 0.93638 0.92328 1.20556 0.93462 1.01105 0.96604 1.22294 0.96114 1.00391 0.98277 1.22076 1.00530 1.02026 0.93322 1.20250 0.92327 1.01632 0.97018 1.21268 0.96541 1.00477 0.92617 0.89320 1.20807 0.82309 0.85805 0.87488 1.90455 1.66009 1.29857 1.66501 1.42016 1.25425 1.27171 1.25481 1.19717 1.10407 1.11538 1.04945 0.90551 1.26033 0.96736 0.96275 1.02060 1.69677 1.23756 1.20413 1.42028 0.84889 0.78002 0.78145 0.77404 1.19933 1.19456 1.19463 0.92264 0.95703 0.90198 0.89511 0.88774 0.85064 0.85890 0.91620 0.91949 0.77087 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.55 71.98 0.62 -4.16 16 2 C -0.07 -2.33 2.39 -10.65 -0.03 -2.35 16 3 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 4 C -0.08 -1.84 5.43 29.66 0.16 -1.68 16 5 C -0.15 -3.36 9.80 27.04 0.27 -3.09 16 6 C -0.16 -4.10 9.80 27.04 0.27 -3.83 16 7 C -0.07 -2.53 5.28 29.66 0.16 -2.38 16 8 C -0.09 -3.26 2.20 -11.40 -0.03 -3.29 16 9 H 0.09 3.07 8.09 -2.38 -0.02 3.05 16 10 C 0.45 22.36 5.51 87.66 0.48 22.85 16 11 O -0.64 -37.19 15.64 -3.06 -0.05 -37.24 16 12 N -0.57 -30.05 4.92 -306.98 -1.51 -31.56 16 13 C -0.34 -19.62 9.68 84.04 0.81 -18.80 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 16 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 17 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.02 1.00 7.19 -2.39 -0.02 0.98 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.12 2.55 8.06 -2.92 -0.02 2.52 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.40 7.47 -2.39 -0.02 2.39 16 30 H 0.40 20.10 7.88 -92.71 -0.73 19.37 16 31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -66.68 259.63 4.31 -62.37 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.38 Total: 27.53 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.18 Total: -16.88 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.23 Total: -81.42 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.05 Total: -37.24 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.68 4.31 -62.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306823217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.219 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds