Wall clock time and date at job start Sun Mar 29 2020 21:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99863 * 2 1 4 4 H 1.48497 * 109.47264 * 270.00377 * 3 2 1 5 5 H 1.48510 * 109.46953 * 30.00284 * 3 2 1 6 6 H 1.48501 * 109.47112 * 149.99900 * 3 2 1 7 7 C 1.40045 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00354 * 180.02562 * 7 2 1 9 9 C 1.46383 * 119.99562 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00078 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99684 * 180.02562 * 9 7 2 12 12 C 1.47168 * 136.31885 * 0.02562 * 11 9 7 13 13 C 1.53780 * 87.75922 * 207.06236 * 12 11 9 14 14 H 1.08998 * 113.70965 * 220.80775 * 13 12 11 15 15 C 1.52033 * 112.71757 * 90.13433 * 13 12 11 16 16 C 1.52544 * 111.22339 * 226.42260 * 15 13 12 17 17 C 1.53073 * 109.06610 * 57.53094 * 16 15 13 18 18 C 1.51473 * 108.71091 * 292.50263 * 17 16 15 19 19 C 1.46824 * 136.31357 * 180.02562 * 11 9 7 20 20 H 1.09002 * 111.80510 * 265.65704 * 19 11 9 21 21 H 0.97002 * 119.99955 * 359.97438 * 1 2 3 22 22 H 1.09000 * 113.50758 * 321.78904 * 12 11 9 23 23 H 1.09003 * 113.50702 * 92.27465 * 12 11 9 24 24 H 1.09004 * 109.12842 * 346.87245 * 15 13 12 25 25 H 1.09008 * 109.12958 * 105.97382 * 15 13 12 26 26 H 1.08996 * 109.54562 * 177.41111 * 16 15 13 27 27 H 1.09000 * 109.53869 * 297.66339 * 16 15 13 28 28 H 1.08998 * 109.54847 * 52.34971 * 17 16 15 29 29 H 1.09003 * 109.55249 * 172.53476 * 17 16 15 30 30 H 1.09006 * 109.25449 * 296.46991 * 18 17 16 31 31 H 1.09000 * 108.32535 * 177.80444 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0466 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2127 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 3.3615 -4.0610 -0.0001 13 6 2.9196 -5.3573 -0.6997 14 1 3.4271 -6.2489 -0.3315 15 6 2.9338 -5.2406 -2.2154 16 6 1.6522 -5.8008 -2.8244 17 6 0.4515 -5.0575 -2.2338 18 6 0.3364 -5.4098 -0.7651 19 6 1.6017 -5.0742 -0.0010 20 1 1.5800 -5.4859 1.0080 21 1 -0.4850 0.8401 0.0004 22 1 3.9996 -3.4293 -0.6180 23 1 3.7672 -4.2215 0.9988 24 1 3.0315 -4.1907 -2.4920 25 1 3.7873 -5.7933 -2.6083 26 1 1.6712 -5.6620 -3.9053 27 1 1.5729 -6.8631 -2.5934 28 1 0.5978 -3.9830 -2.3432 29 1 -0.4565 -5.3570 -2.7573 30 1 0.1320 -6.4759 -0.6661 31 1 -0.4959 -4.8474 -0.3419 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306935071.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:54 Heat of formation + Delta-G solvation = -39.538499 kcal Electronic energy + Delta-G solvation = -14342.453170 eV Core-core repulsion = 12009.330021 eV Total energy + Delta-G solvation = -2333.123149 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.68177 -38.14175 -35.65857 -34.64681 -32.10787 -30.30232 -27.86494 -26.43293 -24.12641 -22.24663 -21.61910 -19.34737 -18.27449 -17.52432 -16.96323 -16.12018 -15.90188 -15.33657 -14.92054 -14.55829 -14.19508 -13.70922 -13.40668 -13.14721 -13.04597 -12.76912 -12.57759 -12.48919 -12.15946 -11.97410 -11.89375 -11.36624 -11.23324 -10.95786 -10.72275 -9.72483 -9.03330 -8.29965 -6.86155 1.34647 1.37119 1.51900 2.19666 2.45176 2.74550 3.42635 3.57013 3.96219 4.03692 4.12660 4.29338 4.49508 4.55362 4.63775 4.69461 4.77426 4.85165 4.94910 5.06314 5.08522 5.15542 5.28217 5.29820 5.35026 5.48257 5.56809 5.69084 5.98504 6.50728 6.84869 7.71272 8.48378 8.68465 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.010169 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.187619 B = 2752.757416 C = 2945.451056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.569 3.431 10 O -0.626 6.626 11 N -0.675 5.675 12 C 0.102 3.898 13 C -0.094 4.094 14 H 0.128 0.872 15 C -0.095 4.095 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.114 4.114 19 C 0.125 3.875 20 H 0.071 0.929 21 H 0.274 0.726 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.032 0.968 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.013 0.987 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -10.279 -3.403 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.606 4.606 8 H 0.095 0.905 9 C 0.376 3.624 10 O -0.513 6.513 11 N -0.414 5.414 12 C -0.021 4.021 13 C -0.113 4.113 14 H 0.146 0.854 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.152 4.152 19 C 0.021 3.979 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.863 -9.977 -3.389 13.147 hybrid contribution -0.274 1.197 0.337 1.274 sum 7.590 -8.779 -3.052 12.000 Atomic orbital electron populations 1.70194 1.09455 1.28835 1.36849 1.26969 0.95559 1.04824 0.91260 0.85046 0.78772 0.75121 0.79506 1.18499 1.19488 1.17339 1.21312 0.94246 0.90058 1.54968 0.90464 1.18134 0.86096 0.82480 0.75656 1.90537 1.15859 1.87085 1.57789 1.49826 1.08880 1.04337 1.78402 1.23106 0.84808 0.94192 1.00030 1.22401 0.94776 0.98260 0.95863 0.85447 1.21025 0.98915 1.00438 0.92852 1.21375 0.93023 1.00247 0.99516 1.21086 0.99381 0.98558 0.95681 1.20952 0.97106 1.01173 0.95971 1.21980 0.95556 0.82155 0.98167 0.91148 0.91622 0.91902 0.90201 0.94897 0.88365 0.91264 0.89305 0.96776 0.92114 0.88837 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.38 11.83 21.83 0.26 -52.12 16 2 C 0.03 1.65 5.50 85.30 0.47 2.12 16 3 Si 1.00 42.70 29.56 68.60 2.03 44.73 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.57 -34.18 9.39 24.83 0.23 -33.94 16 8 H 0.08 4.26 7.77 -2.91 -0.02 4.24 16 9 C 0.57 35.01 7.76 86.36 0.67 35.68 16 10 O -0.63 -43.82 14.50 -4.31 -0.06 -43.89 16 11 N -0.68 -32.32 3.35 -858.03 -2.87 -35.20 16 12 C 0.10 3.57 7.75 82.15 0.64 4.21 16 13 C -0.09 -2.62 4.38 -11.24 -0.05 -2.67 16 14 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.09 -2.55 5.60 30.12 0.17 -2.38 16 16 C -0.10 -2.76 5.90 30.47 0.18 -2.58 16 17 C -0.11 -4.04 5.80 30.12 0.17 -3.87 16 18 C -0.11 -4.33 5.24 29.63 0.16 -4.18 16 19 C 0.13 4.68 4.10 39.71 0.16 4.84 16 20 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 21 H 0.27 15.74 8.29 -92.71 -0.77 14.97 16 22 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 23 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.03 1.11 7.63 -2.38 -0.02 1.09 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 28 H 0.01 0.65 7.92 -2.39 -0.02 0.63 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.02 1.19 7.20 -2.39 -0.02 1.17 16 Total: -1.00 -80.36 253.78 3.25 -77.11 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.10 Total: 12.14 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 2.80 Total: -2.77 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -2.61 Total: -87.32 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.06 Total: -43.89 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -80.36 3.25 -77.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306935071.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.567 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds