Wall clock time and date at job start Sun Mar 29 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86806 * 120.00127 * 2 1 4 4 H 1.48508 * 109.46846 * 270.00045 * 3 2 1 5 5 H 1.48499 * 109.47136 * 29.99834 * 3 2 1 6 6 H 1.48500 * 109.47231 * 150.00178 * 3 2 1 7 7 C 1.40048 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00289 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99375 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00183 * 180.02562 * 9 7 2 12 12 C 1.47928 * 134.93017 * 0.02645 * 11 9 7 13 13 C 1.54560 * 85.80443 * 154.20777 * 12 11 9 14 14 H 1.09005 * 114.92607 * 139.58931 * 13 12 11 15 15 C 1.52975 * 111.08718 * 270.00826 * 13 12 11 16 16 C 1.52975 * 109.31442 * 142.34568 * 15 13 12 17 17 C 1.52635 * 108.73370 * 296.20552 * 16 15 13 18 18 C 1.51621 * 110.98250 * 64.02712 * 17 16 15 19 19 C 1.46920 * 134.94360 * 180.02562 * 11 9 7 20 20 H 1.09000 * 111.40626 * 94.95387 * 19 11 9 21 21 H 0.97003 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.09004 * 113.82241 * 39.99691 * 12 11 9 23 23 H 1.09001 * 113.94910 * 268.44244 * 12 11 9 24 24 H 1.09002 * 109.50279 * 22.38430 * 15 13 12 25 25 H 1.09003 * 109.50074 * 262.30644 * 15 13 12 26 26 H 1.09001 * 109.59404 * 55.97533 * 16 15 13 27 27 H 1.08996 * 109.59246 * 176.42605 * 16 15 13 28 28 H 1.08999 * 109.17804 * 184.41604 * 17 16 15 29 29 H 1.09006 * 109.17193 * 303.63537 * 17 16 15 30 30 H 1.08998 * 108.47274 * 74.66975 * 18 17 16 31 31 H 1.09004 * 108.47052 * 192.05359 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.3784 -4.0288 -0.0001 13 6 2.9113 -5.3408 0.6702 14 1 3.4134 -6.2414 0.3165 15 6 2.9042 -5.2082 2.1941 16 6 1.6988 -5.9598 2.7618 17 6 0.4226 -5.2927 2.2560 18 6 0.3095 -5.4099 0.7485 19 6 1.5674 -5.0664 -0.0010 20 1 1.5491 -5.4731 -1.0121 21 1 -0.4850 0.8401 0.0004 22 1 4.0003 -3.4042 0.6413 23 1 3.7993 -4.1687 -0.9957 24 1 2.8382 -4.1551 2.4675 25 1 3.8222 -5.6328 2.6006 26 1 1.7253 -6.9975 2.4293 27 1 1.7242 -5.9219 3.8509 28 1 -0.4399 -5.7731 2.7181 29 1 0.4354 -4.2386 2.5333 30 1 0.0294 -6.4340 0.5018 31 1 -0.4864 -4.7469 0.4093 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306935072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:55 Heat of formation + Delta-G solvation = -19.236765 kcal Electronic energy + Delta-G solvation = -14304.413535 eV Core-core repulsion = 11972.170736 eV Total energy + Delta-G solvation = -2332.242799 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94856 -36.03347 -34.09977 -32.45024 -30.68086 -28.41090 -25.79816 -25.02924 -22.64868 -20.74324 -19.86901 -17.62295 -16.43790 -15.56782 -15.27040 -14.39488 -14.12105 -13.82223 -13.58939 -12.97144 -12.30555 -11.94468 -11.64516 -11.59191 -11.26963 -11.16928 -10.95552 -10.77919 -10.51350 -10.34576 -10.15811 -9.93691 -9.91399 -9.37217 -8.83223 -7.49240 -7.13136 -6.15594 -4.60532 3.14577 3.21180 3.24744 4.06780 4.40827 4.59085 4.86903 5.17759 5.35174 5.54205 5.64077 5.72542 5.83397 5.86716 6.03861 6.09605 6.17347 6.19322 6.28139 6.36996 6.44374 6.57821 6.71470 6.78208 6.86247 6.98754 7.14618 7.45982 8.15916 8.54189 9.05053 9.68304 10.61868 10.82656 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044488 B = 0.010045 C = 0.009360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.231049 B = 2786.750206 C = 2990.681609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.581 3.419 10 O -0.574 6.574 11 N -0.654 5.654 12 C 0.110 3.890 13 C -0.123 4.123 14 H 0.076 0.924 15 C -0.097 4.097 16 C -0.113 4.113 17 C -0.108 4.108 18 C -0.117 4.117 19 C 0.144 3.856 20 H 0.056 0.944 21 H 0.268 0.732 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.101 -8.876 2.976 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.396 5.396 12 C -0.014 4.014 13 C -0.142 4.142 14 H 0.094 0.906 15 C -0.134 4.134 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.155 4.155 19 C 0.039 3.961 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.102 -8.535 2.970 10.378 hybrid contribution 0.558 0.843 -0.205 1.032 sum 5.661 -7.692 2.765 9.943 Atomic orbital electron populations 1.70020 1.06998 1.27192 1.35641 1.25705 0.94619 1.00185 0.92688 0.86389 0.80176 0.81472 0.78819 1.19764 1.20437 1.18927 1.20832 0.93515 0.89046 1.54138 0.91626 1.17950 0.86502 0.80789 0.75886 1.90586 1.13722 1.85739 1.55564 1.50191 1.05556 1.03788 1.80059 1.23003 0.86983 0.93002 0.98446 1.23039 0.97447 0.97626 0.96062 0.90597 1.21307 0.97262 1.01420 0.93447 1.21375 0.95524 0.98957 0.99230 1.21023 0.96505 1.01440 0.95630 1.20693 0.98927 1.00578 0.95270 1.21388 0.93323 0.84576 0.96780 0.92644 0.92155 0.91301 0.92215 0.91121 0.92508 0.92513 0.92568 0.92950 0.91684 0.93165 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.41 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.54 29.56 -169.99 -5.02 15.51 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.64 9.35 -35.63 -0.33 -15.97 16 8 H 0.07 1.78 7.70 -52.49 -0.40 1.37 16 9 C 0.58 17.04 7.91 -12.99 -0.10 16.93 16 10 O -0.57 -18.80 14.24 5.20 0.07 -18.73 16 11 N -0.65 -15.38 3.38 -175.14 -0.59 -15.98 16 12 C 0.11 2.03 7.84 -2.79 -0.02 2.01 16 13 C -0.12 -1.95 4.39 -90.02 -0.40 -2.34 16 14 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.10 -1.48 5.50 -26.76 -0.15 -1.62 16 16 C -0.11 -1.64 5.90 -26.93 -0.16 -1.80 16 17 C -0.11 -1.90 5.86 -27.62 -0.16 -2.07 16 18 C -0.12 -2.21 5.42 -28.73 -0.16 -2.37 16 19 C 0.14 2.79 4.15 -69.51 -0.29 2.50 16 20 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 22 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.27 7.70 -51.93 -0.40 0.87 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.93 6.81 -51.93 -0.35 1.58 16 LS Contribution 253.90 15.07 3.83 3.83 Total: -1.00 -33.73 253.90 -7.43 -41.16 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.51 Total: -0.69 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.86 Total: -2.34 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.07 Total: -38.73 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.07 Total: -18.73 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.73 -7.43 -41.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306935072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.922 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds