Wall clock time and date at job start Sun Mar 29 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86806 * 120.00127 * 2 1 4 4 H 1.48508 * 109.46846 * 270.00045 * 3 2 1 5 5 H 1.48499 * 109.47136 * 29.99834 * 3 2 1 6 6 H 1.48500 * 109.47231 * 150.00178 * 3 2 1 7 7 C 1.40048 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00289 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99375 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00183 * 180.02562 * 9 7 2 12 12 C 1.47928 * 134.93017 * 0.02645 * 11 9 7 13 13 C 1.54560 * 85.80443 * 154.20777 * 12 11 9 14 14 H 1.09005 * 114.92607 * 139.58931 * 13 12 11 15 15 C 1.52975 * 111.08718 * 270.00826 * 13 12 11 16 16 C 1.52975 * 109.31442 * 142.34568 * 15 13 12 17 17 C 1.52635 * 108.73370 * 296.20552 * 16 15 13 18 18 C 1.51621 * 110.98250 * 64.02712 * 17 16 15 19 19 C 1.46920 * 134.94360 * 180.02562 * 11 9 7 20 20 H 1.09000 * 111.40626 * 94.95387 * 19 11 9 21 21 H 0.97003 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.09004 * 113.82241 * 39.99691 * 12 11 9 23 23 H 1.09001 * 113.94910 * 268.44244 * 12 11 9 24 24 H 1.09002 * 109.50279 * 22.38430 * 15 13 12 25 25 H 1.09003 * 109.50074 * 262.30644 * 15 13 12 26 26 H 1.09001 * 109.59404 * 55.97533 * 16 15 13 27 27 H 1.08996 * 109.59246 * 176.42605 * 16 15 13 28 28 H 1.08999 * 109.17804 * 184.41604 * 17 16 15 29 29 H 1.09006 * 109.17193 * 303.63537 * 17 16 15 30 30 H 1.08998 * 108.47274 * 74.66975 * 18 17 16 31 31 H 1.09004 * 108.47052 * 192.05359 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.3784 -4.0288 -0.0001 13 6 2.9113 -5.3408 0.6702 14 1 3.4134 -6.2414 0.3165 15 6 2.9042 -5.2082 2.1941 16 6 1.6988 -5.9598 2.7618 17 6 0.4226 -5.2927 2.2560 18 6 0.3095 -5.4099 0.7485 19 6 1.5674 -5.0664 -0.0010 20 1 1.5491 -5.4731 -1.0121 21 1 -0.4850 0.8401 0.0004 22 1 4.0003 -3.4042 0.6413 23 1 3.7993 -4.1687 -0.9957 24 1 2.8382 -4.1551 2.4675 25 1 3.8222 -5.6328 2.6006 26 1 1.7253 -6.9975 2.4293 27 1 1.7242 -5.9219 3.8509 28 1 -0.4399 -5.7731 2.7181 29 1 0.4354 -4.2386 2.5333 30 1 0.0294 -6.4340 0.5018 31 1 -0.4864 -4.7469 0.4093 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306935072.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:55 Heat of formation + Delta-G solvation = -42.560759 kcal Electronic energy + Delta-G solvation = -14305.424940 eV Core-core repulsion = 11972.170736 eV Total energy + Delta-G solvation = -2333.254204 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.49729 -38.12987 -35.62298 -34.64234 -32.10154 -30.25798 -27.82729 -26.53243 -24.15236 -22.19198 -21.60645 -19.35349 -18.23640 -17.49007 -16.90685 -16.14193 -15.93175 -15.28489 -15.08479 -14.52934 -14.13313 -13.70677 -13.34817 -13.13600 -13.03876 -12.76392 -12.55468 -12.48377 -12.22672 -11.99356 -11.85364 -11.39585 -11.26366 -10.95483 -10.79236 -9.68714 -9.01806 -8.29018 -6.85621 1.34700 1.37218 1.52059 2.19743 2.45424 2.70246 3.47402 3.57660 3.95186 4.03586 4.13424 4.26970 4.46608 4.53199 4.64094 4.68706 4.78044 4.85307 4.94202 5.06342 5.09146 5.14900 5.28639 5.30885 5.35050 5.47656 5.57812 5.68341 5.99360 6.51361 6.85296 7.68297 8.48773 8.68859 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044488 B = 0.010045 C = 0.009360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.231049 B = 2786.750206 C = 2990.681609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.562 3.438 10 O -0.628 6.628 11 N -0.673 5.673 12 C 0.104 3.896 13 C -0.092 4.092 14 H 0.127 0.873 15 C -0.099 4.099 16 C -0.105 4.105 17 C -0.107 4.107 18 C -0.116 4.116 19 C 0.127 3.873 20 H 0.066 0.934 21 H 0.274 0.726 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.088 0.912 31 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.837 -10.395 3.372 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.606 4.606 8 H 0.096 0.904 9 C 0.369 3.631 10 O -0.516 6.516 11 N -0.412 5.412 12 C -0.019 4.019 13 C -0.111 4.111 14 H 0.145 0.855 15 C -0.136 4.136 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.154 4.154 19 C 0.024 3.976 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.106 0.894 31 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.893 -10.114 3.367 13.264 hybrid contribution -0.311 1.208 -0.347 1.295 sum 7.582 -8.906 3.020 12.080 Atomic orbital electron populations 1.70198 1.09485 1.28805 1.36902 1.26982 0.95555 1.04864 0.91266 0.85045 0.78774 0.75111 0.79509 1.18480 1.19543 1.17305 1.21329 0.94280 0.90100 1.54874 0.90375 1.18257 0.86197 0.82921 0.75700 1.90527 1.15945 1.87275 1.57814 1.50107 1.08465 1.04242 1.78435 1.23365 0.84208 0.94266 1.00108 1.22948 0.94161 0.98002 0.95988 0.85491 1.21366 0.99528 0.99516 0.93232 1.21359 0.92669 0.99932 1.00214 1.21016 0.99693 0.98737 0.94972 1.20674 0.97279 1.01286 0.96126 1.21826 0.95577 0.82078 0.98146 0.91607 0.91654 0.91417 0.90058 0.95131 0.88519 0.89212 0.90921 0.91302 0.97069 0.89373 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.55 11.83 21.84 0.26 -52.29 16 2 C 0.03 1.62 5.50 85.31 0.47 2.09 16 3 Si 1.00 42.73 29.56 68.60 2.03 44.76 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.57 -34.19 9.35 24.83 0.23 -33.95 16 8 H 0.08 4.30 7.70 -2.91 -0.02 4.28 16 9 C 0.56 34.69 7.91 86.36 0.68 35.37 16 10 O -0.63 -44.19 14.24 -4.32 -0.06 -44.25 16 11 N -0.67 -32.28 3.38 -826.25 -2.79 -35.07 16 12 C 0.10 3.62 7.84 86.41 0.68 4.30 16 13 C -0.09 -2.60 4.39 -10.35 -0.05 -2.64 16 14 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 15 C -0.10 -2.71 5.50 30.58 0.17 -2.54 16 16 C -0.10 -2.68 5.90 30.46 0.18 -2.50 16 17 C -0.11 -3.75 5.86 30.02 0.18 -3.57 16 18 C -0.12 -4.41 5.42 29.30 0.16 -4.25 16 19 C 0.13 4.81 4.15 43.74 0.18 4.99 16 20 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 21 H 0.27 15.77 8.29 -92.71 -0.77 15.00 16 22 H 0.07 2.37 7.96 -2.39 -0.02 2.35 16 23 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.03 1.40 6.81 -2.38 -0.02 1.39 16 Total: -1.00 -80.71 253.90 3.42 -77.29 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.10 Total: 12.28 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 2.88 Total: -2.72 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.53 Total: -87.36 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.06 Total: -44.25 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -80.71 3.42 -77.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306935072.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.731 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds