Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00029 * 2 1 4 4 H 1.09005 * 109.70188 * 355.18861 * 3 2 1 5 5 C 1.53192 * 109.58753 * 234.83795 * 3 2 1 6 6 C 1.53036 * 109.31525 * 185.57601 * 5 3 2 7 7 C 1.53048 * 109.53719 * 61.35878 * 6 5 3 8 8 C 1.53185 * 109.31305 * 298.63851 * 7 6 5 9 9 N 1.46920 * 109.58982 * 115.54582 * 3 2 1 10 10 C 1.34780 * 120.62651 * 353.41893 * 9 3 2 11 11 O 1.21684 * 120.00236 * 5.41538 * 10 9 3 12 12 C 1.46377 * 119.99588 * 185.41778 * 10 9 3 13 13 H 1.07998 * 120.00575 * 5.20707 * 12 10 9 14 14 C 1.40054 * 119.99711 * 185.21348 * 12 10 9 15 15 N 1.30676 * 119.99881 * 354.96029 * 14 12 10 16 16 Si 1.86799 * 119.99913 * 174.96429 * 14 12 10 17 17 H 1.48509 * 109.47278 * 94.99675 * 16 14 12 18 18 H 1.48494 * 109.47157 * 214.99296 * 16 14 12 19 19 H 1.48493 * 109.47199 * 334.99660 * 16 14 12 20 20 H 1.08001 * 119.99805 * 5.00475 * 1 2 3 21 21 H 1.07999 * 120.00016 * 185.00422 * 1 2 3 22 22 H 1.08000 * 120.00597 * 180.02562 * 2 1 3 23 23 H 1.09009 * 109.49598 * 305.52548 * 5 3 2 24 24 H 1.08995 * 109.49978 * 65.62500 * 5 3 2 25 25 H 1.08992 * 109.46515 * 181.38106 * 6 5 3 26 26 H 1.08999 * 109.45958 * 301.34842 * 6 5 3 27 27 H 1.09000 * 109.49269 * 58.58942 * 7 6 5 28 28 H 1.09001 * 109.49555 * 178.65173 * 7 6 5 29 29 H 1.09005 * 109.58421 * 174.41705 * 8 7 6 30 30 H 1.08998 * 109.59013 * 294.70161 * 8 7 6 31 31 H 0.97001 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3616 2.1347 -0.0861 5 6 3.0401 1.3343 -1.1799 6 6 3.8989 2.5981 -1.0950 7 6 4.7097 2.5797 0.2029 8 6 3.7520 2.5647 1.3984 9 7 2.8267 1.4333 1.2488 10 6 2.6811 0.5298 2.2383 11 8 1.9882 -0.4554 2.0656 12 6 3.3565 0.7339 3.5208 13 1 3.9024 1.6475 3.7044 14 6 3.2949 -0.2558 4.5099 15 7 2.5546 -1.3170 4.3271 16 14 4.2709 -0.0588 6.0904 17 1 3.4037 0.5408 7.1363 18 1 4.7487 -1.3888 6.5462 19 1 5.4362 0.8285 5.8452 20 1 -0.5400 0.9318 -0.0816 21 1 -0.5400 -0.9317 0.0816 22 1 1.8501 -0.9353 -0.0004 23 1 3.6827 0.4546 -1.1421 24 1 2.4806 1.3369 -2.1153 25 1 4.5779 2.6337 -1.9468 26 1 3.2541 3.4768 -1.1078 27 1 5.3365 1.6883 0.2276 28 1 5.3390 3.4684 0.2513 29 1 4.3212 2.4517 2.3211 30 1 3.1897 3.4979 1.4279 31 1 2.5116 -2.0023 5.0123 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306966987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = -16.081762 kcal Electronic energy + Delta-G solvation = -14275.355574 eV Core-core repulsion = 11943.249586 eV Total energy + Delta-G solvation = -2332.105988 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.89012 -35.75944 -33.45354 -32.38237 -31.59362 -29.11739 -26.43349 -24.09298 -22.59462 -20.63219 -19.21708 -18.76940 -16.44519 -15.58931 -14.80563 -14.35787 -14.06253 -13.80211 -13.28582 -13.14173 -12.84035 -12.36478 -11.66798 -11.55663 -11.17417 -11.03828 -10.98429 -10.58072 -10.50042 -10.38904 -10.25078 -9.93111 -9.67298 -8.99414 -8.85404 -7.20809 -7.00589 -6.15513 -4.67625 3.11138 3.18545 3.21805 3.35518 4.08208 4.51778 4.64499 5.23466 5.29788 5.32360 5.64291 5.74115 5.87743 5.89674 6.03124 6.14556 6.29003 6.30463 6.33456 6.45515 6.55583 6.57050 6.77519 6.94113 7.42336 7.56482 7.65374 7.83106 8.11372 8.34094 8.98920 9.41462 10.53015 10.71378 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.011813 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.026794 B = 2369.776917 C = 3033.969654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.059 4.059 3 C 0.175 3.825 4 H 0.051 0.949 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.121 3.879 9 N -0.637 5.637 10 C 0.557 3.443 11 O -0.549 6.549 12 C -0.543 4.543 13 H 0.073 0.927 14 C 0.088 3.912 15 N -0.766 5.766 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.107 0.893 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 6.467 -6.369 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.078 4.078 3 C 0.071 3.929 4 H 0.069 0.931 5 C -0.165 4.165 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.003 4.003 9 N -0.375 5.375 10 C 0.363 3.637 11 O -0.431 6.431 12 C -0.580 4.580 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.394 5.394 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.188 1.188 20 H 0.095 0.905 21 H 0.105 0.895 22 H 0.125 0.875 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.799 5.738 -6.368 9.018 hybrid contribution 0.519 0.183 0.886 1.043 sum 3.317 5.921 -5.483 8.725 Atomic orbital electron populations 1.23078 0.95605 1.00068 1.10883 1.22493 0.95476 0.97006 0.92856 1.20039 0.92005 0.95349 0.85462 0.93092 1.21938 0.98336 0.98291 0.97937 1.21471 0.98364 0.97936 0.97451 1.21958 0.98310 1.01545 0.95622 1.21425 0.91349 0.89140 0.98408 1.48410 1.45000 1.28686 1.15430 1.18299 0.81240 0.80942 0.83216 1.90581 1.43474 1.29795 1.79266 1.20975 1.34886 1.04450 0.97663 0.90896 1.25723 0.93992 0.94387 0.99083 1.70011 1.30126 1.06794 1.32509 0.86386 0.80400 0.78335 0.81855 1.19814 1.20396 1.18810 0.90507 0.89521 0.87486 0.91729 0.92010 0.92674 0.92439 0.91776 0.92058 0.88896 0.94118 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.43 14.26 29.02 0.41 -5.02 16 2 C -0.06 -1.32 5.72 -36.02 -0.21 -1.53 16 3 C 0.18 3.56 3.24 -68.75 -0.22 3.34 16 4 H 0.05 1.00 7.81 -51.93 -0.41 0.59 16 5 C -0.13 -2.09 5.35 -26.61 -0.14 -2.23 16 6 C -0.11 -1.64 5.88 -26.69 -0.16 -1.80 16 7 C -0.14 -2.10 6.08 -26.61 -0.16 -2.26 16 8 C 0.12 2.27 6.30 -3.72 -0.02 2.25 16 9 N -0.64 -14.61 2.97 -168.19 -0.50 -15.11 16 10 C 0.56 15.65 7.55 -12.98 -0.10 15.55 16 11 O -0.55 -17.02 11.44 5.20 0.06 -16.96 16 12 C -0.54 -15.07 8.76 -35.63 -0.31 -15.38 16 13 H 0.07 1.85 5.84 -52.49 -0.31 1.55 16 14 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 15 N -0.77 -22.62 11.85 55.55 0.66 -21.96 16 16 Si 0.91 19.90 29.56 -169.99 -5.03 14.88 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 H 0.08 1.49 7.85 -52.49 -0.41 1.08 16 21 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 22 H 0.11 2.61 7.33 -52.49 -0.38 2.22 16 23 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.83 5.44 -51.93 -0.28 1.55 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -31.76 253.39 -6.30 -38.06 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.31 Total: 2.02 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.01 Total: -4.74 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.16 Total: -37.07 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.06 Total: -16.96 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.76 -6.30 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306966987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.980 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds