Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00029 * 2 1 4 4 H 1.09005 * 109.70188 * 355.18861 * 3 2 1 5 5 C 1.53192 * 109.58753 * 234.83795 * 3 2 1 6 6 C 1.53036 * 109.31525 * 185.57601 * 5 3 2 7 7 C 1.53048 * 109.53719 * 61.35878 * 6 5 3 8 8 C 1.53185 * 109.31305 * 298.63851 * 7 6 5 9 9 N 1.46920 * 109.58982 * 115.54582 * 3 2 1 10 10 C 1.34780 * 120.62651 * 353.41893 * 9 3 2 11 11 O 1.21684 * 120.00236 * 5.41538 * 10 9 3 12 12 C 1.46377 * 119.99588 * 185.41778 * 10 9 3 13 13 H 1.07998 * 120.00575 * 5.20707 * 12 10 9 14 14 C 1.40054 * 119.99711 * 185.21348 * 12 10 9 15 15 N 1.30676 * 119.99881 * 354.96029 * 14 12 10 16 16 Si 1.86799 * 119.99913 * 174.96429 * 14 12 10 17 17 H 1.48509 * 109.47278 * 94.99675 * 16 14 12 18 18 H 1.48494 * 109.47157 * 214.99296 * 16 14 12 19 19 H 1.48493 * 109.47199 * 334.99660 * 16 14 12 20 20 H 1.08001 * 119.99805 * 5.00475 * 1 2 3 21 21 H 1.07999 * 120.00016 * 185.00422 * 1 2 3 22 22 H 1.08000 * 120.00597 * 180.02562 * 2 1 3 23 23 H 1.09009 * 109.49598 * 305.52548 * 5 3 2 24 24 H 1.08995 * 109.49978 * 65.62500 * 5 3 2 25 25 H 1.08992 * 109.46515 * 181.38106 * 6 5 3 26 26 H 1.08999 * 109.45958 * 301.34842 * 6 5 3 27 27 H 1.09000 * 109.49269 * 58.58942 * 7 6 5 28 28 H 1.09001 * 109.49555 * 178.65173 * 7 6 5 29 29 H 1.09005 * 109.58421 * 174.41705 * 8 7 6 30 30 H 1.08998 * 109.59013 * 294.70161 * 8 7 6 31 31 H 0.97001 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3616 2.1347 -0.0861 5 6 3.0401 1.3343 -1.1799 6 6 3.8989 2.5981 -1.0950 7 6 4.7097 2.5797 0.2029 8 6 3.7520 2.5647 1.3984 9 7 2.8267 1.4333 1.2488 10 6 2.6811 0.5298 2.2383 11 8 1.9882 -0.4554 2.0656 12 6 3.3565 0.7339 3.5208 13 1 3.9024 1.6475 3.7044 14 6 3.2949 -0.2558 4.5099 15 7 2.5546 -1.3170 4.3271 16 14 4.2709 -0.0588 6.0904 17 1 3.4037 0.5408 7.1363 18 1 4.7487 -1.3888 6.5462 19 1 5.4362 0.8285 5.8452 20 1 -0.5400 0.9318 -0.0816 21 1 -0.5400 -0.9317 0.0816 22 1 1.8501 -0.9353 -0.0004 23 1 3.6827 0.4546 -1.1421 24 1 2.4806 1.3369 -2.1153 25 1 4.5779 2.6337 -1.9468 26 1 3.2541 3.4768 -1.1078 27 1 5.3365 1.6883 0.2276 28 1 5.3390 3.4684 0.2513 29 1 4.3212 2.4517 2.3211 30 1 3.1897 3.4979 1.4279 31 1 2.5116 -2.0023 5.0123 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306966987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = -36.593747 kcal Electronic energy + Delta-G solvation = -14276.245040 eV Core-core repulsion = 11943.249586 eV Total energy + Delta-G solvation = -2332.995455 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.59957 -37.59160 -35.17648 -34.37382 -33.24333 -30.64015 -28.46551 -25.68743 -24.07867 -22.34726 -20.74282 -20.55931 -18.35362 -17.53526 -16.53619 -16.02204 -15.60336 -15.41327 -14.84251 -14.66933 -14.38308 -14.12975 -13.50873 -13.22182 -12.96214 -12.74739 -12.53114 -12.41360 -12.03640 -11.92832 -11.67308 -11.39008 -11.22691 -10.93981 -10.76753 -9.08351 -8.94674 -8.19862 -6.81997 1.38630 1.39717 1.54948 1.62137 2.24471 2.47392 2.96227 3.59783 3.85562 4.02253 4.11644 4.22609 4.36567 4.43476 4.59023 4.74596 4.88051 4.99613 5.06063 5.09950 5.15764 5.22687 5.27743 5.40582 5.54210 5.75460 5.88999 6.08377 6.17078 6.45319 6.89132 7.45652 8.48477 8.67775 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.011813 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.026794 B = 2369.776917 C = 3033.969654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.075 4.075 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.120 4.120 6 C -0.109 4.109 7 C -0.129 4.129 8 C 0.113 3.887 9 N -0.641 5.641 10 C 0.537 3.463 11 O -0.595 6.595 12 C -0.570 4.570 13 H 0.091 0.909 14 C 0.031 3.969 15 N -0.821 5.821 16 Si 0.991 3.009 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.247 1.247 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 8.836 -6.702 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.094 4.094 3 C 0.067 3.933 4 H 0.083 0.917 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.167 4.167 8 C -0.010 4.010 9 N -0.378 5.378 10 C 0.343 3.657 11 O -0.481 6.481 12 C -0.606 4.606 13 H 0.109 0.891 14 C -0.184 4.184 15 N -0.450 5.450 16 Si 0.811 3.189 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.170 1.170 20 H 0.117 0.883 21 H 0.102 0.898 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.995 8.161 -6.745 11.316 hybrid contribution 0.078 -0.539 0.904 1.055 sum 4.072 7.622 -5.841 10.430 Atomic orbital electron populations 1.23269 0.95370 1.00997 1.09231 1.22473 0.96004 0.97007 0.93924 1.20256 0.92915 0.94337 0.85817 0.91654 1.21899 0.97789 0.99031 0.97145 1.21479 0.98520 0.96936 0.97688 1.21914 0.97748 1.02405 0.94680 1.21665 0.91446 0.88249 0.99615 1.48299 1.45501 1.28695 1.15327 1.18680 0.81065 0.81354 0.84624 1.90547 1.45093 1.31741 1.80764 1.21500 1.35308 1.05512 0.98262 0.89119 1.26923 0.94703 0.93537 1.03227 1.70183 1.32334 1.08173 1.34325 0.85095 0.78929 0.78651 0.76219 1.18905 1.19966 1.16990 0.88264 0.89835 0.90937 0.93748 0.89499 0.89764 0.90706 0.93576 0.88476 0.90353 0.92075 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.62 14.26 67.78 0.97 -9.66 16 2 C -0.08 -3.43 5.72 25.65 0.15 -3.28 16 3 C 0.17 6.78 3.24 44.23 0.14 6.92 16 4 H 0.07 2.42 7.81 -2.38 -0.02 2.40 16 5 C -0.12 -3.74 5.35 30.67 0.16 -3.57 16 6 C -0.11 -2.68 5.88 30.62 0.18 -2.50 16 7 C -0.13 -3.60 6.08 30.67 0.19 -3.41 16 8 C 0.11 4.05 6.30 86.36 0.54 4.60 16 9 N -0.64 -29.37 2.97 -804.25 -2.39 -31.76 16 10 C 0.54 31.06 7.55 86.36 0.65 31.71 16 11 O -0.60 -38.68 11.44 -4.30 -0.05 -38.73 16 12 C -0.57 -32.07 8.76 24.83 0.22 -31.85 16 13 H 0.09 4.59 5.84 -2.91 -0.02 4.57 16 14 C 0.03 1.73 5.50 85.31 0.47 2.20 16 15 N -0.82 -50.18 11.85 21.84 0.26 -49.92 16 16 Si 0.99 40.95 29.56 68.60 2.03 42.98 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 20 H 0.10 3.72 7.85 -2.91 -0.02 3.70 16 21 H 0.08 3.52 8.06 -2.91 -0.02 3.50 16 22 H 0.07 3.77 7.33 -2.91 -0.02 3.75 16 23 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.08 3.00 5.44 -2.38 -0.01 2.99 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 Total: -1.00 -71.95 253.39 4.62 -67.33 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.10 Total: 18.95 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 3.67 Total: -8.85 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.13 Total: -81.69 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.05 Total: -38.73 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -71.95 4.62 -67.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306966987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.736 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds