Wall clock time and date at job start Sun Mar 29 2020 21:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00010 * 2 1 4 4 H 1.08999 * 109.58242 * 5.27211 * 3 2 1 5 5 C 1.53186 * 109.70937 * 125.63324 * 3 2 1 6 6 C 1.53038 * 109.31531 * 174.49149 * 5 3 2 7 7 C 1.53043 * 109.53612 * 298.63310 * 6 5 3 8 8 C 1.52761 * 109.38223 * 61.23984 * 7 6 5 9 9 N 1.46926 * 109.00879 * 305.58746 * 8 7 6 10 10 C 1.34778 * 120.62927 * 233.58381 * 9 8 7 11 11 O 1.21687 * 119.99943 * 174.32145 * 10 9 8 12 12 C 1.46370 * 119.99867 * 354.59152 * 10 9 8 13 13 H 1.08003 * 120.00392 * 335.01533 * 12 10 9 14 14 C 1.40051 * 119.99904 * 155.01187 * 12 10 9 15 15 N 1.30675 * 120.00310 * 184.36542 * 14 12 10 16 16 Si 1.86801 * 119.99756 * 4.36475 * 14 12 10 17 17 H 1.48495 * 109.47194 * 84.43253 * 16 14 12 18 18 H 1.48505 * 109.46734 * 204.42953 * 16 14 12 19 19 H 1.48494 * 109.47103 * 324.42855 * 16 14 12 20 20 H 1.08001 * 119.99832 * 180.02562 * 1 2 3 21 21 H 1.07997 * 120.00468 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00002 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.49792 * 294.44982 * 5 3 2 24 24 H 1.09006 * 109.49756 * 54.53954 * 5 3 2 25 25 H 1.08992 * 109.46044 * 58.65381 * 6 5 3 26 26 H 1.08998 * 109.46040 * 178.62759 * 6 5 3 27 27 H 1.09000 * 109.49694 * 181.31329 * 7 6 5 28 28 H 1.09003 * 109.50061 * 301.38347 * 7 6 5 29 29 H 1.08998 * 109.51457 * 185.70094 * 8 7 6 30 30 H 1.09007 * 109.42859 * 65.42326 * 8 7 6 31 31 H 0.96991 * 119.99883 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3606 2.1328 0.0944 5 6 3.0494 1.3324 1.1721 6 6 3.9049 2.5984 1.0846 7 6 4.7054 2.5860 -0.2197 8 6 3.7424 2.5698 -1.4055 9 7 2.8165 1.4390 -1.2545 10 6 2.6649 0.5386 -2.2459 11 8 1.9752 -0.4486 -2.0710 12 6 3.3347 0.7451 -3.5309 13 1 3.6010 1.7430 -3.8468 14 6 3.6304 -0.3512 -4.3506 15 7 4.3036 -0.1771 -5.4570 16 14 3.0623 -2.0625 -3.8624 17 1 1.6629 -2.2674 -4.3149 18 1 3.9417 -3.0761 -4.4985 19 1 3.1310 -2.2043 -2.3859 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5401 0.9352 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 2.4974 1.3305 2.1120 24 1 3.6935 0.4542 1.1263 25 1 3.2584 3.4756 1.1056 26 1 4.5907 2.6324 1.9311 27 1 5.3319 3.4765 -0.2705 28 1 5.3343 1.6962 -0.2522 29 1 4.3068 2.4589 -2.3313 30 1 3.1792 3.5028 -1.4279 31 1 4.5080 -0.9364 -6.0249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306966988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:02 Heat of formation + Delta-G solvation = -24.899382 kcal Electronic energy + Delta-G solvation = -14366.946105 eV Core-core repulsion = 12034.457756 eV Total energy + Delta-G solvation = -2332.488349 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22322 -36.24683 -33.62814 -32.65657 -31.92485 -29.30718 -26.74402 -24.27871 -22.73193 -20.75486 -19.37537 -18.83814 -16.67840 -15.80423 -15.18597 -14.35861 -14.22845 -14.05554 -13.37098 -13.22518 -13.11448 -12.32004 -12.23896 -11.87490 -11.57178 -11.16446 -10.98774 -10.64650 -10.61191 -10.39252 -10.19729 -9.94140 -9.51063 -9.11928 -9.00486 -7.57071 -7.18442 -6.60392 -4.80996 3.07949 3.44939 3.51581 3.73785 4.17672 4.30701 4.52780 5.10878 5.18851 5.21915 5.44921 5.51608 5.72356 5.73379 5.91556 6.02820 6.15677 6.18386 6.22460 6.32063 6.42542 6.55978 6.62231 6.75875 7.05193 7.41052 7.54634 7.69550 7.87720 8.33438 8.72561 9.12524 9.99226 10.40968 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032308 B = 0.013751 C = 0.010634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.459056 B = 2035.796814 C = 2632.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 C 0.173 3.827 4 H 0.057 0.943 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.136 4.136 8 C 0.120 3.880 9 N -0.626 5.626 10 C 0.556 3.444 11 O -0.587 6.587 12 C -0.533 4.533 13 H 0.090 0.910 14 C 0.101 3.899 15 N -0.834 5.834 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.321 1.321 19 H -0.252 1.252 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.110 0.890 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 4.324 10.374 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.088 4.088 3 C 0.069 3.931 4 H 0.075 0.925 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.174 4.174 8 C -0.004 4.004 9 N -0.360 5.360 10 C 0.364 3.636 11 O -0.478 6.478 12 C -0.569 4.569 13 H 0.108 0.892 14 C -0.116 4.116 15 N -0.465 5.465 16 Si 0.785 3.215 17 H -0.204 1.204 18 H -0.252 1.252 19 H -0.177 1.177 20 H 0.105 0.895 21 H 0.099 0.901 22 H 0.128 0.872 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.202 3.832 10.272 10.965 hybrid contribution -0.165 -0.553 -0.062 0.580 sum -0.367 3.279 10.210 10.730 Atomic orbital electron populations 1.23163 0.95557 1.00188 1.09655 1.22549 0.95584 0.97136 0.93572 1.20138 0.92207 0.95567 0.85149 0.92533 1.21921 0.98223 0.98527 0.97769 1.21487 0.98455 0.97790 0.97599 1.21874 0.98335 1.01945 0.95248 1.21412 0.91262 0.88504 0.99233 1.48003 1.44735 1.28738 1.14569 1.18436 0.80666 0.80296 0.84177 1.90299 1.45476 1.30965 1.81066 1.20708 1.40011 0.96529 0.99634 0.89236 1.25701 0.90787 1.02204 0.92911 1.69533 1.31356 1.34182 1.11383 0.85525 0.77415 0.78526 0.80067 1.20405 1.25214 1.17731 0.89468 0.90124 0.87226 0.91727 0.91604 0.92305 0.92434 0.91648 0.91631 0.88178 0.93706 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.71 14.25 29.02 0.41 -4.29 16 2 C -0.07 -1.42 5.72 -36.02 -0.21 -1.62 16 3 C 0.17 3.25 3.24 -68.75 -0.22 3.03 16 4 H 0.06 1.01 7.80 -51.93 -0.41 0.61 16 5 C -0.13 -1.93 5.36 -26.62 -0.14 -2.07 16 6 C -0.12 -1.55 5.89 -26.69 -0.16 -1.71 16 7 C -0.14 -2.02 6.06 -26.83 -0.16 -2.19 16 8 C 0.12 2.18 6.24 -3.93 -0.02 2.16 16 9 N -0.63 -13.57 2.98 -168.45 -0.50 -14.08 16 10 C 0.56 14.60 7.15 -12.99 -0.09 14.51 16 11 O -0.59 -16.36 8.66 5.20 0.05 -16.32 16 12 C -0.53 -14.88 8.91 -35.63 -0.32 -15.20 16 13 H 0.09 2.51 6.73 -52.48 -0.35 2.16 16 14 C 0.10 2.86 5.52 -17.36 -0.10 2.76 16 15 N -0.83 -23.68 13.92 55.55 0.77 -22.91 16 16 Si 0.95 24.96 26.20 -169.99 -4.45 20.51 16 17 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 19 H -0.25 -6.87 6.21 56.52 0.35 -6.52 16 20 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 21 H 0.08 1.42 7.85 -52.49 -0.41 1.01 16 22 H 0.11 2.44 7.35 -52.49 -0.39 2.05 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 2.01 5.74 -51.93 -0.30 1.71 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.28 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 249.32 15.07 3.76 3.76 Total: -1.00 -30.35 249.32 -5.81 -36.16 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.42 Total: -2.49 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.01 Total: -4.63 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.27 Total: -36.98 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.05 Total: -16.32 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.45 Total: 20.51 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.35 -5.81 -36.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306966988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.257 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds