Wall clock time and date at job start Sun Mar 29 2020 21:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00010 * 2 1 4 4 H 1.08999 * 109.58242 * 5.27211 * 3 2 1 5 5 C 1.53186 * 109.70937 * 125.63324 * 3 2 1 6 6 C 1.53038 * 109.31531 * 174.49149 * 5 3 2 7 7 C 1.53043 * 109.53612 * 298.63310 * 6 5 3 8 8 C 1.52761 * 109.38223 * 61.23984 * 7 6 5 9 9 N 1.46926 * 109.00879 * 305.58746 * 8 7 6 10 10 C 1.34778 * 120.62927 * 233.58381 * 9 8 7 11 11 O 1.21687 * 119.99943 * 174.32145 * 10 9 8 12 12 C 1.46370 * 119.99867 * 354.59152 * 10 9 8 13 13 H 1.08003 * 120.00392 * 335.01533 * 12 10 9 14 14 C 1.40051 * 119.99904 * 155.01187 * 12 10 9 15 15 N 1.30675 * 120.00310 * 184.36542 * 14 12 10 16 16 Si 1.86801 * 119.99756 * 4.36475 * 14 12 10 17 17 H 1.48495 * 109.47194 * 84.43253 * 16 14 12 18 18 H 1.48505 * 109.46734 * 204.42953 * 16 14 12 19 19 H 1.48494 * 109.47103 * 324.42855 * 16 14 12 20 20 H 1.08001 * 119.99832 * 180.02562 * 1 2 3 21 21 H 1.07997 * 120.00468 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00002 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.49792 * 294.44982 * 5 3 2 24 24 H 1.09006 * 109.49756 * 54.53954 * 5 3 2 25 25 H 1.08992 * 109.46044 * 58.65381 * 6 5 3 26 26 H 1.08998 * 109.46040 * 178.62759 * 6 5 3 27 27 H 1.09000 * 109.49694 * 181.31329 * 7 6 5 28 28 H 1.09003 * 109.50061 * 301.38347 * 7 6 5 29 29 H 1.08998 * 109.51457 * 185.70094 * 8 7 6 30 30 H 1.09007 * 109.42859 * 65.42326 * 8 7 6 31 31 H 0.96991 * 119.99883 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3606 2.1328 0.0944 5 6 3.0494 1.3324 1.1721 6 6 3.9049 2.5984 1.0846 7 6 4.7054 2.5860 -0.2197 8 6 3.7424 2.5698 -1.4055 9 7 2.8165 1.4390 -1.2545 10 6 2.6649 0.5386 -2.2459 11 8 1.9752 -0.4486 -2.0710 12 6 3.3347 0.7451 -3.5309 13 1 3.6010 1.7430 -3.8468 14 6 3.6304 -0.3512 -4.3506 15 7 4.3036 -0.1771 -5.4570 16 14 3.0623 -2.0625 -3.8624 17 1 1.6629 -2.2674 -4.3149 18 1 3.9417 -3.0761 -4.4985 19 1 3.1310 -2.2043 -2.3859 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5401 0.9352 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 2.4974 1.3305 2.1120 24 1 3.6935 0.4542 1.1263 25 1 3.2584 3.4756 1.1056 26 1 4.5907 2.6324 1.9311 27 1 5.3319 3.4765 -0.2705 28 1 5.3343 1.6962 -0.2522 29 1 4.3068 2.4589 -2.3313 30 1 3.1792 3.5028 -1.4279 31 1 4.5080 -0.9364 -6.0249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306966988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:02 Heat of formation + Delta-G solvation = -44.185954 kcal Electronic energy + Delta-G solvation = -14367.782433 eV Core-core repulsion = 12034.457756 eV Total energy + Delta-G solvation = -2333.324677 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.89809 -37.97842 -35.30984 -34.63001 -33.46405 -30.71536 -28.77761 -25.80180 -24.13185 -22.39030 -20.77349 -20.58017 -18.63940 -17.74640 -16.92838 -16.02912 -15.82764 -15.53919 -14.89491 -14.68428 -14.60524 -14.31952 -13.94097 -13.70746 -13.16430 -12.99905 -12.52261 -12.50208 -11.99676 -11.92507 -11.61074 -11.38448 -11.28320 -11.11924 -10.86774 -9.32284 -9.01771 -8.76181 -6.97123 1.30444 1.32358 1.56985 1.64576 2.10251 2.35309 2.74383 3.28174 3.78993 3.99634 4.06907 4.19694 4.32406 4.39284 4.55622 4.71610 4.90341 4.94167 4.97980 5.04052 5.12242 5.21678 5.22834 5.29369 5.51849 5.69715 5.85006 5.95623 6.09041 6.27012 6.65155 7.14467 7.98512 8.29246 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032308 B = 0.013751 C = 0.010634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.459056 B = 2035.796814 C = 2632.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.091 4.091 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.121 4.121 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.113 3.887 9 N -0.627 5.627 10 C 0.552 3.448 11 O -0.611 6.611 12 C -0.550 4.550 13 H 0.078 0.922 14 C 0.069 3.931 15 N -0.858 5.858 16 Si 1.000 3.000 17 H -0.289 1.289 18 H -0.304 1.304 19 H -0.272 1.272 20 H 0.090 0.910 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 5.502 12.203 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.110 4.110 3 C 0.065 3.935 4 H 0.093 0.907 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.168 4.168 8 C -0.010 4.010 9 N -0.360 5.360 10 C 0.358 3.642 11 O -0.503 6.503 12 C -0.587 4.587 13 H 0.096 0.904 14 C -0.146 4.146 15 N -0.490 5.490 16 Si 0.832 3.168 17 H -0.216 1.216 18 H -0.233 1.233 19 H -0.199 1.199 20 H 0.109 0.891 21 H 0.118 0.882 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.361 5.036 12.116 13.125 hybrid contribution -0.178 -0.855 -0.567 1.041 sum -0.539 4.181 11.549 12.294 Atomic orbital electron populations 1.23391 0.95242 1.01290 1.07338 1.22543 0.96175 0.97040 0.95254 1.20418 0.93067 0.95140 0.84849 0.90736 1.21907 0.97692 0.99034 0.97281 1.21491 0.98652 0.97169 0.97372 1.21837 0.97752 1.02571 0.94628 1.21604 0.91473 0.88040 0.99867 1.47983 1.44951 1.28400 1.14671 1.18313 0.80239 0.80939 0.84687 1.90285 1.46176 1.31930 1.81899 1.20908 1.40595 0.96119 1.01062 0.90386 1.26179 0.91097 1.04130 0.93152 1.69546 1.32286 1.35176 1.11994 0.84826 0.76612 0.76944 0.78421 1.21618 1.23346 1.19867 0.89142 0.88231 0.90013 0.88990 0.93421 0.90505 0.89683 0.88582 0.93485 0.90833 0.91492 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.53 14.25 67.78 0.97 -7.57 16 2 C -0.09 -3.64 5.72 25.65 0.15 -3.49 16 3 C 0.17 5.96 3.24 44.23 0.14 6.11 16 4 H 0.07 2.41 7.80 -2.39 -0.02 2.39 16 5 C -0.12 -3.35 5.36 30.67 0.16 -3.19 16 6 C -0.11 -2.47 5.89 30.62 0.18 -2.29 16 7 C -0.13 -3.51 6.06 30.53 0.19 -3.33 16 8 C 0.11 3.95 6.24 86.22 0.54 4.49 16 9 N -0.63 -26.66 2.98 -805.06 -2.40 -29.06 16 10 C 0.55 29.26 7.15 86.36 0.62 29.88 16 11 O -0.61 -34.37 8.66 -4.31 -0.04 -34.41 16 12 C -0.55 -31.34 8.91 24.83 0.22 -31.12 16 13 H 0.08 4.51 6.73 -2.91 -0.02 4.49 16 14 C 0.07 3.94 5.52 85.30 0.47 4.41 16 15 N -0.86 -49.21 13.92 21.84 0.30 -48.91 16 16 Si 1.00 52.30 26.20 68.60 1.80 54.10 16 17 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 18 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 19 H -0.27 -15.03 6.21 99.48 0.62 -14.41 16 20 H 0.09 3.18 8.06 -2.91 -0.02 3.15 16 21 H 0.10 3.23 7.85 -2.91 -0.02 3.20 16 22 H 0.08 3.70 7.35 -2.91 -0.02 3.68 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.97 5.74 -2.39 -0.01 2.95 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.29 15.24 8.29 -92.72 -0.77 14.47 16 Total: -1.00 -65.55 249.32 4.31 -61.24 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.01 Total: 3.13 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 3.63 Total: -6.09 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.09 Total: -77.97 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.04 Total: -34.41 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 1.80 Total: 54.10 kcal Total: -65.55 4.31 -61.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306966988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.056 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds